Pre_GI: BLASTP Hits

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Query: NC_016945:666000:685453 Vibrio cholerae IEC224 chromosome II, complete sequence

Start: 685453, End: 685758, Length: 306

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016628:373815:378606378606378896291Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein9e-1992
NC_005773:1333863:133713713371371337439303Pseudomonas syringae pv. phaseolicola 1448A, complete genomeendo/excinuclease domain protein1e-1168.6
NC_014221:2188250:219222621922262192504279Truepera radiovictrix DSM 17093 chromosome, complete genomeExcinuclease ABC C subunit domain protein2e-1167.8
NC_013158:2303000:230516023051602305435276Halorhabdus utahensis DSM 12940, complete genomeExcinuclease ABC C subunit domain protein8e-1062.4
NC_005125:760721:784486784486784842357Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-0961.2
NC_010681:1234500:125690612569061257235330Burkholderia phytofirmans PsJN chromosome 1, complete sequenceExcinuclease ABC C subunit domain protein2e-0961.2
NC_010674:311378:323994323994324251258Clostridium botulinum B str. Eklund 17B, complete genomeGIY-YIG domain protein5e-0960.1
NC_012796:2090000:209527920952792095539261Desulfovibrio magneticus RS-1, complete genomehypothetical protein5e-0959.7
NC_016884:157894:178155178155178418264Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeExcinuclease ABC C subunit domain-containing protein1e-0858.2
NC_012121:113912:132481132481132741261Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative nuclease2e-0857.4
NC_016616:2112211:214716621471662147462297Dechlorosoma suillum PS chromosome, complete genomeputative endonuclease containing a URI domain3e-0857
NC_012108:481657:500637500637500957321Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein4e-0857
NC_012796:4075583:412763641276364127914279Desulfovibrio magneticus RS-1, complete genomehypothetical protein5e-0856.2
NC_010723:298954:317452317452317709258Clostridium botulinum E3 str. Alaska E43, complete genomeGIY-YIG domain protein6e-0752.8
NC_015554:817500:817549817549817929381Alteromonas sp. SN2 chromosome, complete genomeputative URI domain endonuclease1e-0652
NC_008260:2142311:215805421580542158443390Alcanivorax borkumensis SK2, complete genomehypothetical protein2e-0651.2
NC_013204:2305140:230806023080602308425366Eggerthella lenta DSM 2243, complete genomeExcinuclease ABC C subunit domain protein6e-0649.7