Pre_GI: BLASTP Hits

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Query: NC_016822:2940000:2950801 Shigella sonnei 53G, complete genome

Start: 2950801, End: 2953062, Length: 2262

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007941:11319:2293322933251942262Escherichia coli UTI89 plasmid pUTI89, complete sequenceputative outer membrane colicin Js receptor01512
NC_005126:3204980:3218668321866832209562289Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein0746
NC_017518:1558000:1558044155804415608092766Neisseria meningitidis NZ-05/33 chromosome, complete genomeheme-utilization protein Hup2e-42174
NC_017505:926801:9424729424729452372766Neisseria meningitidis alpha710 chromosome, complete genomeTonB-dependent receptor2e-42174
NC_017514:761000:7744237744237771372715Neisseria meningitidis M01-240149 chromosome, complete genomeheme-utilization protein Hup2e-42174
NC_013421:1954915:1967625196762519703032679Pectobacterium wasabiae WPP163, complete genomeTonB-dependent heme/hemoglobin receptor family protein3e-27124
NC_014836:2527000:2528093252809325309002808Desulfurispirillum indicum S5 chromosome, complete genomeTonB-dependent heme/hemoglobin receptor family protein2e-1275.1
NC_012779:1820244:1837602183760218395991998Edwardsiella ictaluri 93-146, complete genomeTonB-dependent heme/hemoglobin receptor family protein7e-0756.6