Pre_GI: BLASTP Hits

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Query: NC_016822:2940000:2948074 Shigella sonnei 53G, complete genome

Start: 2948074, End: 2948640, Length: 567

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:472583247258324726707876Salmonella enterica subsp. enterica serovar Paratyphi C strainreplication protein9e-1683.2
NC_012968:239476:261008261008261964957Methylotenera mobilis JLW8, complete genomeplasmid replicase8e-1476.6
NC_010682:460523:471980471980472939960Ralstonia pickettii 12J chromosome 1, complete sequenceplasmid replicase1e-1376.3
NC_007951:570500:585227585227586225999Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative replicase9e-1373.2
NC_012796:3600630:3651169365116936524311263Desulfovibrio magneticus RS-1, complete genomeputative rep protein1e-1169.7
NC_012796:3600630:3629647362964736307351089Desulfovibrio magneticus RS-1, complete genomeputative rep protein4e-0961.2
NC_007275:1:30430416171314Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completeReplicase family family2e-0858.9
NC_012796:77071:9217792177932831107Desulfovibrio magneticus RS-1, complete genomehypothetical protein2e-0858.9