Pre_GI: BLASTP Hits

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Query: NC_016822:246715:264886 Shigella sonnei 53G, complete genome

Start: 264886, End: 265410, Length: 525

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002185:234719:252884252884253408525Escherichia coli W, complete genomeOM lipoprotein3e-98357
NC_013421:1143500:116421911642191164743525Pectobacterium wasabiae WPP163, complete genometype VI secretion lipoprotein, VC_A0113 family2e-45181
NC_013592:1424560:144493114449311445467537Dickeya dadantii Ech586, complete genometype VI secretion lipoprotein, VC_A0113 family5e-42170
NC_014228:4331327:434968243496824350236555Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable lipoprotein of SST VI cluster)3e-41167
NC_008570:1986466:200520120052012005716516Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative lipoprotein3e-41167
NC_013892:274297:276634276634277188555Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein8e-41166
NC_005126:349658:393634393634394200567Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-40164
NC_012962:293976:313385313385313939555Photorhabdus asymbiotica, complete genomehypothetical protein2e-38158
NC_015968:4117835:414789841478984148416519Enterobacter asburiae LF7a chromosome, complete genometype VI secretion lipoprotein3e-34144
NC_012913:1832500:184388218438821844568687Aggregatibacter aphrophilus NJ8700, complete genometype VI secretion lipoprotein, family2e-1271.6
NC_002947:4604582:460732546073254608122798Pseudomonas putida KT2440, complete genomehypothetical protein3e-0651.6