Pre_GI: BLASTP Hits

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Query: NC_016822:2341127:2361954 Shigella sonnei 53G, complete genome

Start: 2361954, End: 2363090, Length: 1137

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009617:3184924:3189742318974231908721131Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeVWA containing CoxE family protein8e-85314
NC_012792:962292:9682839682839694101128Variovorax paradoxus S110 chromosome 2, complete genomeVWA containing CoxE family protein3e-81302
NC_015577:1682970:1682970168297016841691200Treponema azotonutricium ZAS-9 chromosome, complete genomeCoxE family protein1e-73276
NC_014210:5409324:5423899542389954250711173Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,VWA containing CoxE family protein6e-59228
NC_007333:1677406:1689288168928816905201233Thermobifida fusca YX, complete genomevon Willebrand factor, type A7e-53208
NC_007384:2251792:227215922721592272437279Shigella sonnei Ss046, complete genome3e-47189