Pre_GI: BLASTP Hits

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Query: NC_016582:7699420:7710795 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 7710795, End: 7711241, Length: 447

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014666:1601972:160351016035101603950441Frankia sp. EuI1c chromosome, complete genomehypothetical protein4e-52203
NC_017186:3947874:396070839607083961148441Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein2e-48191
NC_014318:3947845:396073339607333961119387Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein1e-38158
NC_009921:6483660:649716664971666497600435Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-1995.1
NC_012522:5987644:599082059908205991251432Rhodococcus opacus B4, complete genomehypothetical protein2e-1787.8
NC_016948:2129335:215738921573892157817429Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein5e-1683.2
NC_008595:1413354:141747714174771417983507Mycobacterium avium 104, complete genomehypothetical protein6e-1682.8
NC_008271:35909:460004600046467468Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencehypothetical protein2e-1580.9
NC_009142:3943829:394646539464653947301837Saccharopolyspora erythraea NRRL 2338, complete genomehypothetical protein3e-1477.4
NC_014666:5057000:507558950755895076053465Frankia sp. EuI1c chromosome, complete genomehypothetical protein4e-1477
NC_009921:565947:567588567588568082495Frankia sp. EAN1pec, complete genomeconserved hypothetical protein5e-1373.2
NC_009921:2605721:261723726172372618157921Frankia sp. EAN1pec, complete genomeHemerythrin HHE cation binding domain protein7e-1372.8
NC_016582:2069677:207737320773732077759387Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein9e-1372.4
NC_014168:2820315:282446528244652824893429Segniliparus rotundus DSM 44985 chromosome, complete genomehypothetical protein2e-1271.2
NC_008595:1176658:118780411878041188211408Mycobacterium avium 104, complete genomehypothetical protein4e-1270.1
NC_018581:32092:386713867139099429Gordonia sp. KTR9 chromosome, complete genomehypothetical protein9e-1062.4
NC_008596:3404832:343101534310153431353339Mycobacterium smegmatis str. MC2 155, complete genomeconserved hypothetical protein TIGR000269e-0752.4
NC_013510:262888:279382279382279855474Thermomonospora curvata DSM 43183, complete genomehypothetical protein5e-0650.1
NC_006361:1720031:172731217273121727749438Nocardia farcinica IFM 10152, complete genomehypothetical protein7e-0649.3