Pre_GI: BLASTP Hits

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Query: NC_016582:5227461:5247991 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5247991, End: 5248836, Length: 846

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:5550582:555058255505825551418837Streptomyces coelicolor A3(2), complete genomeintegral membrane protein6e-125446
NC_018750:5114434:511634651163465117176831Streptomyces venezuelae ATCC 10712, complete genomeputative succinate dehydrogenase5e-122437
NC_013929:3564500:358202735820273582707681Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-103375
NC_014165:3559305:357197335719733572773801Thermobispora bispora DSM 43833 chromosome, complete genomeputative integral membrane protein3e-84311
NC_018581:3323500:334407233440723344896825Gordonia sp. KTR9 chromosome, complete genomehypothetical protein4e-72271
NC_015656:1653450:167632316763231677141819Frankia symbiont of Datisca glomerata chromosome, complete genomeintegral membrane protein2e-65249
NC_009142:1282589:129103612910361291836801Saccharopolyspora erythraea NRRL 2338, complete genomepossible succinate dehydrogenase2e-65249