Pre_GI: BLASTP Hits

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Query: NC_016582:4983222:4989610 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4989610, End: 4990140, Length: 531

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013947:1956923:197052219705221970998477Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeCupin 2 conserved barrel domain-containing protein7e-25113
NC_016582:389729:404107404107404571465Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-1271.6
NC_018750:5078705:509226650922665092805540Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein4e-1167.8
NC_008278:613329:628242628242628706465Frankia alni ACN14a, complete genomehypothetical protein1e-0859.3
NC_014501:5419958:543969954396995440277579Cyanothece sp. PCC 7822 chromosome, complete genomeCupin 2 conserved barrel domain-containing protein2e-0755.5
NC_014963:2972358:298251629825162983067552Terriglobus saanensis SP1PR4 chromosome, complete genomeCupin 2 barrel domain-containing protein7e-0753.5
NC_008025:1799106:181674718167471817238492Deinococcus geothermalis DSM 11300, complete genomeCupin 2, conserved barrel1e-0652.8
NC_013730:3863581:387088238708823871457576Spirosoma linguale DSM 74, complete genomeCupin 2 conserved barrel domain protein2e-0652.4
NC_015312:3675148:367679736767973677261465Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeCupin 2 barrel domain-containing protein2e-0652
NC_014963:2946212:296587429658742966506633Terriglobus saanensis SP1PR4 chromosome, complete genomeCupin 2 barrel domain-containing protein7e-0650.1