Pre_GI: BLASTP Hits

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Query: NC_016582:4874500:4882565 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4882565, End: 4883911, Length: 1347

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015434:3755560:376356737635673764481915Verrucosispora maris AB-18-032 chromosome, complete genomeCBS domain-containing protein1e-64247
NC_011751:3048490:3075733307573330768301098Escherichia coli UMN026 chromosome, complete genomehypothetical protein7e-53208
NC_012854:1:8310831093651056Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,putative transcriptional regulator, XRE family1e-47191
NC_003888:7337453:7369817736981773708691053Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-30134