Pre_GI: BLASTP Hits

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Query: NC_016582:389729:399175 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 399175, End: 399405, Length: 231

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008578:591357:592846592846593097252Acidothermus cellulolyticus 11B, complete genometranscription factor WhiB1e-1891.7
NC_019673:8348604:837424483742448374498255Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-1890.5
NC_008699:1816392:181793418179341818185252Nocardioides sp. JS614, complete genometranscription factor WhiB6e-1889.4
NC_009342:951761:965783965783966043261Corynebacterium glutamicum R chromosome, complete genomehypothetical protein9e-1785.5
NC_003450:788000:805532805532805792261Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein9e-1785.5
NC_016109:5455060:546957554695755469826252Kitasatospora setae KM-6054, complete genomeputative WhiB family transcriptional regulator3e-1684
NC_015656:4879904:490103349010334901413381Frankia symbiont of Datisca glomerata chromosome, complete genometranscription factor WhiB3e-1684
NC_013595:9149273:916781091678109168064255Streptosporangium roseum DSM 43021, complete genometranscription factor WhiB3e-1684
NC_013521:940495:959515959515959763249Sanguibacter keddieii DSM 10542, complete genometranscription factor WhiB2e-1581.3
NC_015145:2693749:272982927298292730095267Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscription factor WhiB5e-1579.7
NC_012704:1747539:176677417667741767034261Corynebacterium kroppenstedtii DSM 44385, complete genomeputative transcriptional regulator, WhiB family2e-1477.8
NC_014643:54500:601076010760355249Rothia dentocariosa ATCC 17931 chromosome, complete genomeWhiB family transcription regulator3e-1477.4
NC_010168:1373337:139118713911871391444258Renibacterium salmoninarum ATCC 33209 chromosome, complete genomecell division transcription factor3e-1477
NC_015312:3675148:373739737373973737654258Pseudonocardia dioxanivorans CB1190 chromosome, complete genometranscription factor WhiB4e-1476.6
NC_008271:35909:621056210562461357Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencepossible transcriptional regulator, WhiB family1e-0858.5
NC_008271:140846:153884153884154210327Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencepossible transcriptional regulator, WhiB family1e-0755.1
NC_003888:7659639:768578476857847686425642Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-0753.9
NC_016111:2932495:293989729398972940463567Streptomyces cattleya NRRL 8057, complete genomeprophage protein3e-0753.9
NC_010612:4837346:484750748475074848031525Mycobacterium marinum M, complete genometranscriptional regulatory protein2e-0651.2
NC_016111:613729:624324624324624704381Streptomyces cattleya NRRL 8057, complete genomeTranscription factor WhiB2e-0651.2
NC_013235:1325975:132839413283941328678285Nakamurella multipartita DSM 44233, complete genometranscription factor WhiB4e-0650.1