Pre_GI Gene

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Host: NC_010168 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010168:1373337 Renibacterium salmoninarum ATCC 33209 chromosome, complete genome

Host Lineage: Renibacterium salmoninarum; Renibacterium; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This bacterial pathogen is the causal agent of bacterial kidney disease (BKD) of salmonid fish. This disease is a significant threat to the healthy and sustainable production of salmon for consumption and species conservation efforts in the USA. The development of treatments are further complicated as the organism is vertically transmitted from infected females to their eggs, is difficult to culture in vitro, and is a facultative intracellular pathogen. The completion of the genome sequence of Renibacterium salmoninarum will be a benefit to the scientific community at many levels and will be of immediate use to researchers and fish health practitioners dealing with BKD in farmed fish as well as captive broodstocks of endangered species-listed populations. For example, genome data will serve as a foundation for identification of virulence factors, DNA vaccine gene candidates, and improved diagnostic tests.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
13733371374311975FTR1 family iron permeaseQuickGO ontologyBLASTP
13743011374969669hypothetical protein
13750171375382366IS994QuickGO ontologyBLASTP
13753921376282891IS994QuickGO ontologyBLASTP
13763331377070738glycosyltransferaseQuickGO ontologyBLASTP
13770721377473402hypothetical proteinBLASTP
137785613790071152UDP-N-acetylglucosamine 2-epimeraseQuickGO ontologyBLASTP
137900413801131110capsular polysaccharide synthesis enzymeQuickGO ontologyBLASTP
138011713820961980hypothetical proteinBLASTP
138209313843032211acyltransferase domain-containing proteinQuickGO ontologyBLASTP
13842961385027732polysaccharidepolyol phosphate ABC transporter ATPaseQuickGO ontologyBLASTP
13850291385901873polysaccharide export ABC transporter permeaseQuickGO ontologyBLASTP
138589813879012004bifunctional udp-galactofuranosyl transferaseQuickGO ontologyBLASTP
138789813890821185UDP-galactopyranose mutaseQuickGO ontologyBLASTP
13893161389771456hypothetical protein
13904871390930444hypothetical protein
13911871391444258cell division transcription factorQuickGO ontologyBLASTP
139149113929541464sensory transduction protein kinaseQuickGO ontologyBLASTP
139298213978624881NAD-specific glutamate dehydrogenaseQuickGO ontologyBLASTP