Pre_GI: BLASTP Hits

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Query: NC_016582:11820671:11859415 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11859415, End: 11861169, Length: 1755

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016641:1530905:1545364154536415470851722Paenibacillus terrae HPL-003 chromosome, complete genomeendo-1,4-beta-glucanase8e-150531
NC_014622:5683400:5687984568798456897051722Paenibacillus polymyxa SC2 chromosome, complete genomeendoglucanase b1e-149530
NC_016935:4117485:4145998414599841506384641Paenibacillus mucilaginosus 3016 chromosome, complete genomexyloglucanase4e-134478
NC_015690:4361000:4379929437992943844584530Paenibacillus mucilaginosus KNP414 chromosome, complete genomexyloglucanase6e-134478
NC_010001:3895264:3898410389841039006412232Clostridium phytofermentans ISDg, complete genomeCellulase2e-78294
NC_014393:3979350:3982200398220039837471548Clostridium cellulovorans 743B chromosome, complete genomeglycoside hydrolase family 55e-48192
NC_015690:4361000:4387115438711543887821668Paenibacillus mucilaginosus KNP414 chromosome, complete genomeCellulase3e-43176
NC_016935:4117485:4153215415321541548821668Paenibacillus mucilaginosus 3016 chromosome, complete genomecellulase3e-43176
NC_014371:177536:1938601938601950741215Prevotella melaninogenica ATCC 25845 chromosome chromosome II,cellulase (glycosyl hydrolase family 5)5e-31136
NC_013410:3787626:3790383379038337918101428Fibrobacter succinogenes subsp. succinogenes S85 chromosome,cellulase7e-30132
NC_015172:1621223:1640733164073316422771545Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeglycoside hydrolase family 57e-1169.3
NC_012997:4152938:4152938415293841540681131Teredinibacter turnerae T7901, complete genomeglycoside hydrolase family 5 domain protein3e-0860.8
NC_008010:321561:3353773353773368461470Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceglycoside hydrolase, family 54e-0653.9
NC_014158:73344:8538485384865591176Tsukamurella paurometabola DSM 20162 chromosome, complete genomeglycoside hydrolase family 56e-0653.1