Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:3787626 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
378762637890471422hypothetical protein
378904437903151272hypothetical protein
379038337918101428cellulaseQuickGO ontologyBLASTP
379202937932461218hypothetical proteinBLASTP
379326537945241260hypothetical proteinBLASTP
379450537956681164hypothetical proteinBLASTP
379567237969821311hypothetical proteinBLASTP
379698937994062418hypothetical proteinBLASTP
37995223800013492hypothetical protein
37999953800603609hypothetical proteinBLASTP
38006683801576909DNA-binding proteinQuickGO ontologyBLASTP
380174138056163876phosphoribosylformylglycinamidine synthaseQuickGO ontologyBLASTP
38057633806191429WxcM domain-containing proteinQuickGO ontologyBLASTP
38061753807158984hypothetical proteinBLASTP