Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:11535695:11535695 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11535695, End: 11538559, Length: 2865

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:8525000:8525111852511185280082898Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-113411
NC_019968:382991:4288764288764317162841Prevotella dentalis DSM 3688 chromosome 2, complete sequenceglycosyl hydrolases family 22e-23111
NC_004663:5437794:5441391544139154441652775Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein4e-23110
NC_015177:4478986:4491453449145344942062754Pedobacter saltans DSM 12145 chromosome, complete genomeglycoside hydrolase family 2 sugar binding protein9e-1583.2
NC_013061:1856969:1863879186387918667432865Pedobacter heparinus DSM 2366, complete genomeglycoside hydrolase family 2 sugar binding3e-1275.1
NC_011886:3903343:3917265391726539205673303Arthrobacter chlorophenolicus A6, complete genomeglycoside hydrolase family 2 sugar binding3e-1274.7
NC_014655:2581968:2582876258287625854102535Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 2 sugar binding protein7e-0963.5