Pre_GI: BLASTP Hits

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Query: NC_016582:10326938:10352068 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10352068, End: 10352817, Length: 750

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:7533000:7534086753408675357891704Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein5e-47187
NC_009921:4186000:4194350419435041960261677Frankia sp. EAN1pec, complete genometransposase IS4 family protein3e-30132
NC_019673:3582004:3589233358923335909571725Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS4 family7e-28124
NC_016582:10159486:1018472310184723101862851563Streptomyces bingchenggensis BCW-1 chromosome, complete genometransposase IS4 family protein7e-26117
NC_003276:252217:2685282685282701771650Nostoc sp. PCC 7120 plasmid pCC7120alpha, complete sequencehypothetical protein3e-23108
NC_013161:4209554:4212861421286142145161656Cyanothece sp. PCC 8802, complete genometransposase IS4 family protein8e-22103
NC_010510:339879:3733143733143747511438Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete4e-2098.2
NC_011894:6516856:6535052653505265367131662Methylobacterium nodulans ORS 2060, complete genometransposase IS4 family protein7e-2097.8
NC_015957:5109902:5120226512022651218001575Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase IS4 family protein8e-2097.4
NC_009930:4909:7389738990441656Acaryochloris marina MBIC11017 plasmid pREB5, complete sequencetransposase, IS4 family, putative8e-2097.4
NC_014221:38000:4584045840474651626Truepera radiovictrix DSM 17093 chromosome, complete genomehypothetical protein5e-1788.2
NC_010511:4258000:4272393427239342737211329Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein8e-1787.4
NC_011894:901630:9221799221799238431665Methylobacterium nodulans ORS 2060, complete genomehypothetical protein3e-1582
NC_016113:994469:1007589100758910093011713Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencetransposase1e-1480.1
NC_016111:4207110:4218939421893942206511713Streptomyces cattleya NRRL 8057, complete genometransposase1e-1480.1
NC_016111:1546505:1551403155140315531151713Streptomyces cattleya NRRL 8057, complete genometransposase1e-1480.1
NC_013730:2558999:2576947257694725786221676Spirosoma linguale DSM 74, complete genome4e-1168.6
NC_013124:1544821:1557180155718015587061527Acidimicrobium ferrooxidans DSM 10331, complete genometransposase IS4 family protein3e-1065.5
NC_013124:1544821:1548704154870415502301527Acidimicrobium ferrooxidans DSM 10331, complete genometransposase IS4 family protein3e-1065.5
NC_013124:1439915:1460962146096214624881527Acidimicrobium ferrooxidans DSM 10331, complete genometransposase IS4 family protein3e-1065.5
NC_013124:1439915:1444024144402414455501527Acidimicrobium ferrooxidans DSM 10331, complete genometransposase IS4 family protein3e-1065.5
NC_009921:3551036:359201935920193592441423Frankia sp. EAN1pec, complete genomehypothetical protein5e-1065.1