Pre_GI: BLASTP Hits

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Query: NC_016582:10159486:10181922 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10181922, End: 10183280, Length: 1359

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003902:1416000:1417071141707114185251455Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein1e-35151
NC_017271:1477323:1477323147732314784591137Xanthomonas campestris pv. raphani 756C chromosome, completehypothetical protein2e-33144
NC_016109:8664974:8709158870915887106031446Kitasatospora setae KM-6054, complete genomehypothetical protein1e-20101
NC_016109:62000:7267672676741211446Kitasatospora setae KM-6054, complete genomehypothetical protein1e-20101
NC_010688:3515885:353081835308183531603786Xanthomonas campestris pv. campestris, complete genomehypothetical protein8e-1788.6
NC_007435:305937:3285073285073299371431Burkholderia pseudomallei 1710b chromosome II, complete sequenceprobable secreted protein9e-1685.1
NC_017030:3608000:3629593362959336310111419Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein3e-1480.5
NC_009380:3043140:3051728305172830531071380Salinispora tropica CNB-440 chromosome, complete genomeFAD-binding monooxygenase1e-1377.8
NC_015656:454500:4734994734994750281530Frankia symbiont of Datisca glomerata chromosome, complete genomeFAD dependent oxidoreductase8e-1375.5
NC_013743:1045488:1050086105008610514921407Haloterrigena turkmenica DSM 5511, complete genomehypothetical protein1e-1171.6
NC_010511:4450312:4464078446407844655111434Methylobacterium sp. 4-46 chromosome, complete genomeFAD-binding monooxygenase3e-1067
NC_009953:2388605:2406012240601224073221311Salinispora arenicola CNS-205 chromosome, complete genomeFAD-binding monooxygenase2e-0963.9
NC_010688:3515885:352999935299993530808810Xanthomonas campestris pv. campestris, complete genomehypothetical protein5e-0962.8
NC_010511:4696868:4744724474472447461061383Methylobacterium sp. 4-46 chromosome, complete genomeFAD-binding monooxygenase1e-0861.6
NC_012522:2623172:2623172262317226245301359Rhodococcus opacus B4, complete genomehypothetical protein6e-0859.3
NC_010511:1074557:1119072111907211204541383Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein9e-0858.5