Pre_GI: BLASTP Hits

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Query: NC_016582:10137951:10140208 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10140208, End: 10141107, Length: 900

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:2678544:270438327043832705282900Streptomyces violaceusniger Tu 4113 chromosome, complete genomeType II secretion system F domain-containing protein5e-90331
NC_014210:1471752:152616515261651527058894Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Type II secretion system F domain protein2e-29130
NC_003888:4927170:494910949491094950017909Streptomyces coelicolor A3(2), complete genomeintegral membrane protein3e-27122
NC_013131:7945280:796116879611687962061894Catenulispora acidiphila DSM 44928, complete genometype II secretion system protein7e-23108
NC_003155:210240:212678212678213562885Streptomyces avermitilis MA-4680, complete genomeintegral membrane protein2e-1169.7
NC_016943:1735057:173505717350571735956900Blastococcus saxobsidens DD2, complete genomeputative Type II secretion system protein F3e-0756.2
NC_017955:3731480:379536637953663796274909Modestobacter marinus, complete genometype II secretion system protein F8e-0651.2