Pre_GI: BLASTP Hits

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Query: NC_014169:2353711:2373370 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 2373370, End: 2373939, Length: 570

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015172:1195782:120306212030621203688627Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometranscriptional regulator, TetR family4e-21100
NC_010001:1702350:170326217032621703882621Clostridium phytofermentans ISDg, complete genometranscriptional regulator, TetR family6e-1993.6
NC_011837:2856500:287036328703632870941579Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-1685.1
NC_009706:2925000:293888829388882939439552Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator3e-1685.1
NC_004193:375416:664955664955665572618Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator6e-1684
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome2e-1581.6
NC_015690:1186545:126198612619861262594609Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator TetR1e-1375.9
NC_015737:1441086:145719314571931457834642Clostridium sp. SY8519, complete genometranscriptional regulator1e-1272.8
NC_014393:4352216:437911843791184379702585Clostridium cellulovorans 743B chromosome, complete genomeregulatory protein TetR3e-1271.6
NC_016048:2907702:298652729865272987111585Oscillibacter valericigenes Sjm18-20, complete genomeputative TetR family transcriptional regulator7e-1270.5
NC_013204:3419817:343745134374513437984534Eggerthella lenta DSM 2243, complete genometranscriptional regulator, TetR family1e-1169.7
UCMB5137:2054735:206797320679732068524552Bacillus atrophaeus UCMB-5137TetR family transcriptional regulator2e-1169.3
NC_013406:5066769:509420850942085094822615Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator3e-1065.1
NC_004461:73390:913299132991874546Staphylococcus epidermidis ATCC 12228, complete genometranscriptional regulator tetR-family3e-1065.1
NC_011660:366000:381000381000381563564Listeria monocytogenes HCC23 chromosome, complete genomeTetR family transcriptional regulator3e-1064.7
NC_003212:2293425:229890822989082299471564Listeria innocua Clip11262, complete genomehypothetical protein3e-1064.7
NC_003909:4333097:435421743542174354834618Bacillus cereus ATCC 10987, complete genometranscriptional regulator, TetR family4e-1064.3
NC_017188:1567000:158646415864641587000537Bacillus amyloliquefaciens TA208 chromosome, complete genometranscriptional regulator7e-1063.5
NC_017190:1832402:185577918557791856315537Bacillus amyloliquefaciens LL3 chromosome, complete genomeTetR family transcriptional regulator7e-1063.5
NC_017191:1568369:158776815877681588304537Bacillus amyloliquefaciens XH7 chromosome, complete genomeTetR family transcriptional regulator7e-1063.5
NC_017195:2498113:250271925027192503264546Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator, TetR family, putative9e-1063.2
NC_016047:637778:649228649228649773546Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeTetR family transcriptional regulator9e-1063.2
NC_015759:726612:745904745904746485582Weissella koreensis KACC 15510 chromosome, complete genomeTetR family transcriptional regulator1e-0962.8
NC_017347:2724313:274572327457232746310588Staphylococcus aureus subsp. aureus T0131 chromosome, completeDNA-binding protein1e-0962.8
NC_003909:1205605:122160112216011222146546Bacillus cereus ATCC 10987, complete genometranscriptional regulator, TetR family, putative2e-0962
NC_004722:4496000:451605545160554516672618Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, TetR family2e-0962
NC_014976:2735423:276082227608222761367546Bacillus subtilis BSn5 chromosome, complete genomeTetR family transcriptional regulator4e-0961.2
NC_011772:4487378:450169645016964502313618Bacillus cereus G9842, complete genometranscriptional regulator, TetR family5e-0960.8
NC_006274:4408734:442549344254934426110618Bacillus cereus E33L, complete genometranscriptional regulator, TetR family5e-0960.8
NC_016628:763833:784837784837785361525Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, TetR family1e-0859.3
NC_016609:6177651:619097561909756191586612Niastella koreensis GR20-10 chromosome, complete genomeTetR family transcriptional regulator2e-0859.3
NC_016641:5671186:567788656778865678542657Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator4e-0857.8
NC_013165:329185:385457385457385984528Slackia heliotrinireducens DSM 20476, complete genometranscriptional regulator6e-0857.4
NC_014551:1872000:189862418986241899085462Bacillus amyloliquefaciens DSM 7, complete genomeTransposon Tn10 tetC protein; ORFL7e-0857
NC_012881:3004784:303061530306153031202588Desulfovibrio salexigens DSM 2638, complete genometranscriptional regulator, TetR family9e-0856.6
NC_009142:5579563:560297856029785603583606Saccharopolyspora erythraea NRRL 2338, complete genomeTetR-family transcriptional regulator2e-0755.1
NC_013406:3975512:399704839970483997596549Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator3e-0755.1
NC_013165:2700978:271503227150322715640609Slackia heliotrinireducens DSM 20476, complete genometranscriptional regulator5e-0753.9
NC_013928:797714:811768811768812367600Streptococcus mutans NN2025, complete genometranscriptional regulator7e-0753.5
NC_008526:74500:783397833978917579Lactobacillus casei ATCC 334, complete genomeTranscriptional regulator2e-0652
NC_014960:115614:129255129255129923669Anaerolinea thermophila UNI-1, complete genomeTetR family transcriptional regulator3e-0651.6
NC_014963:3942363:394772139477213948311591Terriglobus saanensis SP1PR4 chromosome, complete genomeregulatory protein TetR4e-0651.2
NC_013406:3583474:359179335917933592398606Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator5e-0650.8
NC_018750:7653000:765570176557017656294594Streptomyces venezuelae ATCC 10712, complete genomeTetR-family transcriptional regulator6e-0650.4