Pre_GI: BLASTP Hits

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Query: NC_013717:5726:27058 Citrobacter rodentium ICC168 plasmid pCROD1, complete sequence

Start: 27058, End: 27339, Length: 282

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013889:1623697:163974916397491640033285Thioalkalivibrio sp. K90mix chromosome, complete genometranscriptional regulator, XRE family5e-1683.2
NC_014733:2201485:221464722146472214934288Methylovorus sp. MP688 chromosome, complete genomeDNA-binding protein7e-1372.8
NC_009997:2352948:237978023797802380067288Shewanella baltica OS195, complete genomeputative transcriptional regulator2e-1167.8
NC_012489:4336790:436106143610614361372312Gemmatimonas aurantiaca T-27, complete genomeXre family DNA binding protein2e-1064.3
NC_014960:2371989:238808623880862388379294Anaerolinea thermophila UNI-1, complete genomeXre family DNA-binding protein6e-0959.3
NC_012214:3931824:395304639530463953339294Erwinia pyrifoliae Ep1/96, complete genomePutative HTH-type transcriptional regulator3e-0857
NC_010501:5442000:545511554551155455402288Pseudomonas putida W619, complete genometranscriptional regulator, XRE family7e-0856.2
NC_010067:3538169:356225335622533562543291Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0755.1
NC_014722:846084:887212887212887508297Burkholderia rhizoxinica HKI 454, complete genometranscriptional repressor2e-0754.3
NC_015942:1047576:106278710627871063098312Acidithiobacillus ferrivorans SS3 chromosome, complete genomeXRE family transcriptional regulator3e-0753.9
NC_013960:2592389:259616825961682596473306Nitrosococcus halophilus Nc4 chromosome, complete genomeputative DNA-binding protein3e-0753.9
NC_011601:3951324:397336039733603973650291Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometranscriptional regulator7e-0752.8
NC_008258:3581583:360063636006363600926291Shigella flexneri 5 str. 8401, complete genomehypothetical protein7e-0752.8
NC_013960:1258000:126262312626231262910288Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain protein8e-0752.4
NC_012560:3282704:329687332968733297160288Azotobacter vinelandii DJ, complete genometranscriptional regulator protein1e-0651.6
NC_021150:3282702:329687132968713297158288Azotobacter vinelandii CA6, complete genometranscriptional regulator protein1e-0651.6
NC_013960:243884:253670253670253984315Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain protein3e-0650.8
NC_010655:1606901:163224316322431632686444Akkermansia muciniphila ATCC BAA-835, complete genometranscriptional regulator, XRE family4e-0650.1
NC_021150:3200959:320919032091903209501312Azotobacter vinelandii CA6, complete genomeDNA-binding protein5e-0649.7
NC_012560:3200961:320919232091923209503312Azotobacter vinelandii DJ, complete genomeDNA-binding protein5e-0649.7
NC_007484:293763:312416312416312724309Nitrosococcus oceani ATCC 19707, complete genometranscriptional regulator, XRE family8e-0649.3