Pre_GI: BLASTP Hits

Some Help

Query: NC_013716:5141269:5155888 Citrobacter rodentium ICC168, complete genome

Start: 5155888, End: 5156541, Length: 654

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:863209:886497886497887150654Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector EspJ2e-104377
NC_011601:756885:770711770711771364654Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector EspJ-like protein2e-104377
NC_013941:2425233:243836124383612439014654Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-94345
NC_011353:2563056:257618425761842576837654Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenon-LEE-encoded effector EspJ1e-94345
NC_002695:2655445:266857326685732669226654Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-94345
NC_002655:2730659:274379027437902744443654Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933U1e-94345
NC_013008:2561586:257529925752992575817519Escherichia coli O157:H7 str. TW14359 chromosome, complete genometranslocated type III secretion system effector2e-77288