Pre_GI: BLASTP Hits

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Query: NC_013716:5141269:5144628 Citrobacter rodentium ICC168, complete genome

Start: 5144628, End: 5145041, Length: 414

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013353:5361207:536234153623415362754414Escherichia coli O103:H2 str. 12009, complete genomeDNA polymerase III, psi subunit2e-63240
AP010958:5361207:536234153623415362754414Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA polymerase III, psi subunit2e-63240
NC_011750:5045927:505018550501855050598414Escherichia coli IAI39 chromosome, complete genomeDNA polymerase III subunit psi1e-62238
NC_016513:2103958:212012021201202120557438Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeDNA polymerase III subunit psi5e-1786.3
NC_013416:1748848:176601617660161766465450Aggregatibacter actinomycetemcomitans D11S-1, complete genomeDNA polymerase III subunit psi6e-1786.3
NC_004459:1679335:170352917035291703930402Vibrio vulnificus CMCP6 chromosome I, complete sequenceDNA polymerase III subunit psi6e-0753.1
NC_014965:670115:694351694351694752402Vibrio vulnificus MO6-24/O chromosome I, complete sequenceDNA polymerase III subunit psi6e-0752.8