Pre_GI: BLASTP Hits

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Query: NC_013716:4885776:4903603 Citrobacter rodentium ICC168, complete genome

Start: 4903603, End: 4905072, Length: 1470

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:528296:5377655377655392101446Enterobacteriaceae bacterium strain FGI 57, complete genometype II secretory pathway, component PulD0729
NC_017047:4379989:4388118438811843895661449Rahnella aquatilis HX2 chromosome, complete genometype II and III secretion system protein3e-139495
NC_015061:4286000:4294232429423242956801449Rahnella sp. Y9602 chromosome, complete genometype II and III secretion system protein3e-139495
NC_014618:1040381:1054655105465510561121458Enterobacter cloacae SCF1 chromosome, complete genometype IV pilus biogenesis protein5e-125448
NC_015761:299386:3330553330553345031449Salmonella bongori NCTC 12419, complete genomepilus biosynthesis outer membrane lipoprotein3e-123442
NC_012668:2744393:2769385276938527708541470Vibrio cholerae MJ-1236 chromosome 1, complete sequencetoxin co-regulated pilus biosynthesis protein C3e-36153
NC_009457:351512:3836903836903851591470Vibrio cholerae O395 chromosome 2, complete sequencetoxin co-regulated pilus biosynthesis outer membrane protein C5e-36152