Pre_GI: BLASTP Hits

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Query: NC_013410:2037840:2047233 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2047233, End: 2050877, Length: 3645

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016935:7872425:7894974789497478984683495Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-62241
NC_011961:85083:9116291162944883327Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencehypothetical protein2e-42175
NC_017059:2491924:2504916250491625081253210Rhodospirillum photometricum DSM 122, complete genomehypothetical protein5e-28127
NC_004547:3207776:3217207321720732205393333Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative ATP-binding protein4e-27124
NC_018870:1695588:1719501171950117229053405Thermacetogenium phaeum DSM 12270 chromosome, complete genomehypothetical protein5e-26120
NC_014394:738365:7392007392007425293330Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein3e-25118
NC_008825:1258500:1265095126509512684273333Methylibium petroleiphilum PM1, complete genomeputative ATP-binding protein4e-25118
NC_015573:569625:5782065782065816073402Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein1e-23113
NC_011662:2374955:2389933238993323925872655Thauera sp. MZ1T, complete genomeputative ATP-binding protein2e-23112
NC_008596:1302000:1316779131677913202373459Mycobacterium smegmatis str. MC2 155, complete genomehypothetical protein3e-23111
NC_016610:3297080:3293874329387432970833210Tannerella forsythia ATCC 43037 chromosome, complete genomehypothetical protein2e-21105
NC_008758:143907:1484161484161517513336Polaromonas naphthalenivorans CJ2 plasmid pPNAP02, completeputative ATP-binding protein3e-20101
NC_013093:626473:6493686493686529463579Actinosynnema mirum DSM 43827, complete genomehypothetical protein6e-1997.4
NC_013956:595320:6047126047126075042793Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein8e-1997.1
NC_009441:3562125:3562125356212535653403216Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein2e-1895.9
NC_016613:1159980:1163360116336011667223363Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein2e-1792.4
NC_019942:1211535:1223700122370012270623363Aciduliprofundum sp. MAR08-339, complete genomehypothetical protein2e-1689.4
NC_015564:2870631:2890641289064128940363396Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomehypothetical protein4e-1688.2
NC_013222:615948:6412206412206444533234Robiginitalea biformata HTCC2501, complete genomehypothetical protein6e-1687.4
NC_009486:1737703:1749551174955117529223372Thermotoga petrophila RKU-1 chromosome, complete genomehypothetical protein7e-1687.4
NC_018748:3187233:3184031318403131872553225Emticicia oligotrophica DSM 17448 chromosome, complete genomehypothetical protein2e-1379
NC_018870:1695588:1702079170207917064044326Thermacetogenium phaeum DSM 12270 chromosome, complete genomehypothetical protein1e-1173.2
NC_015311:403281:4170834170834204843402Prevotella denticola F0289 chromosome, complete genomehypothetical protein6e-1170.9
NC_011138:105196:1223941223941256273234Alteromonas macleodii 'Deep ecotype', complete genomeputative ATP-binding protein2e-1069.3
NC_010424:825117:8401528401528429652814Candidatus Desulforudis audaxviator MP104C, complete genomehypothetical protein3e-0965.1
NC_013595:9547254:9573901957390195775183618Streptosporangium roseum DSM 43021, complete genomehypothetical protein5e-0964.3
NC_015573:569625:5947495947495990534305Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein4e-0758.2
NC_012918:928903:9403169403169444854170Geobacter sp. M21 chromosome, complete genomehypothetical protein2e-0655.8
NC_014033:1215790:1231114123111412343383225Prevotella ruminicola 23 chromosome, complete genomehypothetical protein3e-0655.1