Pre_GI: BLASTP Hits

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Query: NC_013410:155236:165224 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 165224, End: 165559, Length: 336

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018721:297906:319943319943320287345Psychroflexus torquis ATCC 700755 chromosome, complete genomeCRISPR-associated protein Cas22e-31134
NC_016001:1893685:189947218994721899882411Flavobacterium branchiophilum, complete genomeputative CRISPR-associated (Cas) protein7e-27119
NC_014033:1564733:157004915700491570357309Prevotella ruminicola 23 chromosome, complete genomeCRISPR-associated protein Cas24e-26116
NC_009952:366959:396006396006396350345Dinoroseobacter shibae DFL 12, complete genomeCRISPR-associated protein Cas27e-1785.9
NC_007929:111092:119835119835120140306Lactobacillus salivarius subsp. salivarius UCC118, complete genomeCRISPR-associated protein4e-1579.7
NC_017501:1913360:192129519212951921621327Neisseria meningitidis 8013, complete genomehypothetical protein1e-1375.1
NC_017517:1915842:192377519237751924101327Neisseria meningitidis M01-240355 chromosome, complete genomehypothetical protein5e-1373.2
NC_015738:2652500:268322526832252683560336Eggerthella sp. YY7918, complete genomehypothetical protein5e-1373.2
NC_009785:1414892:142534214253421425665324Streptococcus gordonii str. Challis substr. CH1, complete genomeCRISPR-associated protein Cas29e-1372.4
NC_013016:354000:368248368248368556309Neisseria meningitidis alpha14 chromosome, complete genomehypothetical protein1e-1271.6
NC_015433:1315363:132247113224711322794324Streptococcus suis ST3 chromosome, complete genomeCRISPR-associated protein Cas22e-1271.2
NC_016790:31240:389513895139280330Corynebacterium diphtheriae VA01 chromosome, complete genomeCRISPR-associated protein3e-1270.5
NC_016801:36000:404654046540794330Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeCRISPR-associated protein3e-1270.5
NC_004606:1107500:114840311484031148744342Streptococcus pyogenes SSI-1, complete genomehypothetical protein1e-1168.6
NC_010644:254725:265602265602265928327Elusimicrobium minutum Pei191, complete genomeCRISPR-associated Cas2 family protein1e-1168.2
NC_015389:2030154:204113720411372041445309Coriobacterium glomerans PW2 chromosome, complete genomeCRISPR-associated protein, Cas2 family1e-1065.1
NC_004070:747146:748027748027748353327Streptococcus pyogenes MGAS315, complete genomehypothetical protein2e-1064.3
NC_010816:2252732:226246222624622262794333Bifidobacterium longum DJO10A, complete genomehypothetical protein2e-1064.3
NC_008578:2206500:221016422101642210490327Acidothermus cellulolyticus 11B, complete genomeCRISPR-associated protein Cas23e-1063.9
NC_014363:1396912:140657714065771406912336Olsenella uli DSM 7084 chromosome, complete genomeCRISPR-associated protein, Cas2 family4e-1063.5
NC_011134:1360122:136812913681291368452324Streptococcus equi subsp. zooepidemicus str. MGCS10565, completeCRISPR assocaiated protein Cas29e-0958.9
NC_012780:189949:196332196332196688357Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequenceCRISPR-associated protein Cas22e-0650.8