Pre_GI: BLASTP Hits

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Query: NC_013410:1203937:1217044 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1217044, End: 1217868, Length: 825

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014924:725380:738804738804739697894Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeLicD family protein8e-22104
NC_018867:1161648:118815111881511188960810Dehalobacter sp. CF chromosome, complete genomeLicD family protein7e-1891.3
NC_013740:842841:860269860269861132864Acidaminococcus fermentans DSM 20731, complete genomeLicD family protein2e-1789.7
NC_015152:272500:293889293889294728840Spirochaeta sp. Buddy chromosome, complete genomeLicD family protein2e-1789.4
NC_016077:998741:103340910334091034191783Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein4e-1789
NC_021175:1973880:198462719846271985550924Streptococcus oligofermentans AS 1.3089, complete genomeLPS biosynthesis protein2e-1686.7
NC_014033:1691822:170608717060871706884798Prevotella ruminicola 23 chromosome, complete genomeLicD family protein3e-1685.9
NC_014833:3362500:3362802336280233642351434Ruminococcus albus 7 chromosome, complete genomeLicD family protein3e-1685.9
NC_003454:1889529:190249719024971903282786Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeLipooligosaccharide cholinephosphotransferase5e-1685.1
NC_008309:1628939:165215516521551652955801Haemophilus somnus 129PT, complete genomelipopolysaccharide choline phosphotransferase5e-1685.1
NC_013530:2819569:284511128451112845965855Xylanimonas cellulosilytica DSM 15894, complete genomeLicD family protein1e-1584
NC_014484:1690272:169878216987821699657876Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein3e-1582.4
NC_013165:1665014:1666876166687616686841809Slackia heliotrinireducens DSM 20476, complete genomeLPS biosynthesis protein2e-1479.7
NC_013204:2826500:286077028607702861591822Eggerthella lenta DSM 2243, complete genomeLicD family protein3e-1479.3
NC_012778:263241:2673122673122693182007Eubacterium eligens ATCC 27750, complete genomelipopolysaccharide cholinephosphotransferase6e-1478.2
NC_009615:2184300:219244321924432193351909Parabacteroides distasonis ATCC 8503 chromosome, complete genomelipopolysaccharide biosynthesis protein7e-1477.8
NC_016077:998741:102856310285631029525963Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein8e-1477.8
NC_009615:4425500:443994744399474440861915Parabacteroides distasonis ATCC 8503 chromosome, complete genomelipopolysaccharide biosynthesis protein2e-1376.6
NC_013165:1407000:142395514239551424740786Slackia heliotrinireducens DSM 20476, complete genomeLPS biosynthesis protein7e-1374.7
NC_013165:1407000:141870114187011419669969Slackia heliotrinireducens DSM 20476, complete genomeLPS biosynthesis protein7e-1374.3
NC_012778:263241:2693522693522715982247Eubacterium eligens ATCC 27750, complete genomelipopolysaccharide cholinephosphotransferase2e-1272.8
NC_009615:1627961:164066816406681641627960Parabacteroides distasonis ATCC 8503 chromosome, complete genomecholinephosphotransferase6e-1271.6
NC_015311:2826000:283314028331402834012873Prevotella denticola F0289 chromosome, complete genomeLICD family protein6e-1271.6
NC_013204:2371499:238343723834372384297861Eggerthella lenta DSM 2243, complete genomeLicD family protein7e-1271.2
NC_008054:1617544:162537716253771626288912Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeEpsIIM, Hypothetical protein3e-1169.3
NC_015737:2691246:275495627549562755768813Clostridium sp. SY8519, complete genomehypothetical protein3e-1169.3
NC_008529:1634403:164056316405631641474912Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeLPS biosynthesis protein3e-1169.3
NC_014363:645397:653831653831654697867Olsenella uli DSM 7084 chromosome, complete genomeLicD family protein4e-1168.9
NC_004307:1815825:1829701182970118307741074Bifidobacterium longum NCC2705, complete genomehypothetical protein with similarity to LicD required for phosphorylcholine incorporation in teichoic and lipoteichoic acids5e-1168.6
NC_014363:645397:661761661761662606846Olsenella uli DSM 7084 chromosome, complete genomeLicD family protein1e-1067.4
NC_011883:1182000:118961111896111190558948Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,LicD family protein1e-1067
NC_020134:134875:154624154624155325702Clostridium stercorarium subsp. stercorarium DSM 8532, completeLicD family protein2e-1066.2
NC_009614:3748950:375072737507273751560834Bacteroides vulgatus ATCC 8482 chromosome, complete genomelipopolysaccharide biosynthesis protein3e-1065.9
NC_013204:2371499:238167523816752382529855Eggerthella lenta DSM 2243, complete genomeLicD family protein1e-0963.5
NC_014334:1954333:196817619681761968991816Lactobacillus casei str. Zhang chromosome, complete genomeputative LicD-family phosphotransferase9e-0960.8
NC_012778:263241:285817285817286449633Eubacterium eligens ATCC 27750, complete genomehypothetical protein2e-0756.6
NC_013204:2826500:283942228394222840255834Eggerthella lenta DSM 2243, complete genomeLicD family protein4e-0755.5
NC_015067:2136048:215401621540162154936921Bifidobacterium longum subsp. longum JCM 1217, complete genomephosphotransferase5e-0755.1