Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:134875 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1348751363711497glycosyltransferases PMT familyQuickGO ontologyBLASTP
136449137306858prenyltransferase UbiA familyQuickGO ontologyBLASTP
137402138397996putative Fe-S oxidoreductaseQuickGO ontologyBLASTP
138415139293879NADH dehydrogenase-like proteinQuickGO ontologyBLASTP
139317140237921glycosyl transferase family 2QuickGO ontologyBLASTP
140266141240975tRNA-dihydrouridine synthase 1QuickGO ontologyBLASTP
1415741447893216surface-layer 125 kDa proteinQuickGO ontologyBLASTP
145277145588312transcriptional regulatorQuickGO ontologyBLASTP
145585145782198hypothetical protein
1458081471421335exopolysaccharide biosynthesis-like proteinQuickGO ontologyBLASTP
1472421503553114O-antigen polymeraseQuickGO ontologyBLASTP
151511152032522putative sugar transferase EpsLQuickGO ontologyBLASTP
152073152687615transposase for insertion sequence element IS1081QuickGO ontologyBLASTP
1528271542661440hypothetical proteinBLASTP
154624155325702LicD family proteinQuickGO ontologyBLASTP
1553281564311104putative glycosyltransferase EpsFQuickGO ontologyBLASTP
1564521575551104putative polysaccharide polymerase proteinQuickGO ontologyBLASTP
157565158107543CDP-glycerolpolyglycerophosphate glycerophosphotransferaseQuickGO ontologyBLASTP
158139158501363CDP-glycerolpolyglycerophosphate glycerophosphotransferaseQuickGO ontologyBLASTP
1585951598031209transposase for insertion sequence element IS256 in transposon Tn4001QuickGO ontologyBLASTP