Pre_GI: BLASTP Hits

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Query: NC_013410:1152188:1180302 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1180302, End: 1181711, Length: 1410

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015474:487517:5033115033115047291419Pyrococcus sp. NA2 chromosome, complete genomearylsulfatase regulatory protein, putative1e-1584.7
NC_014328:3682000:3689705368970536910721368Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Fe-S oxidoreductase2e-1480.9
NC_010067:4418000:4418174441817444193581185Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1378.2
NC_013895:188225:1990521990522003951344Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeradical SAM domain protein4e-1376.6
NC_011898:598014:6202596202596216021344Clostridium cellulolyticum H10, complete genomeRadical SAM domain protein5e-1376.3
NC_015416:2967511:2978289297828929797761488Methanosaeta concilii GP-6 chromosome, complete genomeradical SAM domain-containing protein6e-1375.9
NC_015416:2967511:2996078299607829975861509Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein2e-1273.9
NC_007759:1419171:1427682142768214291151434Syntrophus aciditrophicus SB, complete genomeradical SAM superfamily protein1e-1171.6
NC_016641:1984206:1990528199052819919491422Paenibacillus terrae HPL-003 chromosome, complete genomearylsulfatase regulator2e-1170.9
NC_005125:2393701:2406210240621024075231314Gloeobacter violaceus PCC 7421, complete genomehypothetical protein3e-1170.1
NC_014387:2297304:2314241231424123156411401Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeradical SAM domain-containing protein4e-1169.7
NC_021182:4186515:4200167420016742013001134Clostridium pasteurianum BC1, complete genomeanaerobic sulfatase-maturating enzyme1e-1068.6
NC_007794:3218729:3240527324052732419811455Novosphingobium aromaticivorans DSM 12444, complete genomeRadical SAM2e-1067.8
NC_009523:4222696:4258720425872042611222403Roseiflexus sp. RS-1 chromosome, complete genomeradical SAM domain-containing protein3e-1067
NC_011837:1935294:1935976193597619373191344Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-1066.6
NC_009706:1935418:1936100193610019374431344Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-1066.6
NC_007512:944941:9920649920649935151452Pelodictyon luteolum DSM 273, complete genomearylsulfatase regulator (Fe-S oxidoreductase)5e-1066.2
NC_013411:1454465:1467696146769614691201425Geobacillus sp. Y412MC61, complete genomeRadical SAM domain protein8e-1065.5
NC_014915:595569:6076406076406090641425Geobacillus sp. Y412MC52 chromosome, complete genomeRadical SAM domain protein8e-1065.5
NC_016048:1930089:1943172194317219445511380Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-0964.3
NC_007492:3384077:3411859341185934132921434Pseudomonas fluorescens PfO-1, complete genomeRadical SAM2e-0964.3
NC_016077:113246:1185971185971200211425Acidaminococcus intestini RyC-MR95 chromosome, complete genomeradical SAM family protein3e-0963.9
NC_016109:6640000:6646140664614066473001161Kitasatospora setae KM-6054, complete genomehypothetical protein5e-0962.8
NC_016610:61661:9558395583968781296Tannerella forsythia ATCC 43037 chromosome, complete genomeradical SAM domain-containing protein1e-0861.6
NC_013421:801542:8033468033468045691224Pectobacterium wasabiae WPP163, complete genomeRadical SAM domain protein2e-0860.8
NC_015601:726962:7319987319987333861389Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeradical SAM domain-containing protein4e-0859.7
NC_010003:1126800:1126800112680011281671368Petrotoga mobilis SJ95, complete genomeRadical SAM domain protein1e-0758.2
NC_009635:94937:112163112163113035873Methanococcus aeolicus Nankai-3 chromosome, complete genomeradical SAM domain-containing protein2e-0757.4
NC_016616:2997348:3017645301764530191051461Dechlorosoma suillum PS chromosome, complete genomeHis-Xaa-Ser repeat-associated upstream radical SAM protein2e-0757.4
NC_016610:61661:1153081153081167681461Tannerella forsythia ATCC 43037 chromosome, complete genomeradical SAM domain-containing protein3e-0757
NC_020389:1936000:1943557194355719448761320Methanosarcina mazei Tuc01, complete genomeArylsulfatase regulatory protein3e-0757
NC_020291:2040047:2040047204004720414681422Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeCys-rich peptide radical SAM maturase CcpM3e-0756.6
NC_019791:1272850:1312723131272313137841062Caldisphaera lagunensis DSM 15908 chromosome, complete genomepeptide-modifying radical SAM protein3e-0756.6
NC_009615:3490206:3497632349763234990681437Parabacteroides distasonis ATCC 8503 chromosome, complete genomeFe-S oxidoreductase4e-0756.6
NC_003552:3269000:3277504327750432788441341Methanosarcina acetivorans C2A, complete genomearylsulfatase regulator6e-0755.8
NC_016610:61661:8988989889913851497Tannerella forsythia ATCC 43037 chromosome, complete genomeradical SAM domain-containing protein2e-0654.3
NC_010002:3357752:3369390336939033704091020Delftia acidovorans SPH-1, complete genomeRadical SAM domain protein3e-0653.9
NC_011769:3434744:3445161344516134466241464Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeRadical SAM domain protein3e-0653.5
NC_015160:1055220:1065374106537410666211248Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRadical SAM domain-containing protein4e-0653.1