Pre_GI: BLASTP Hits

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Query: NC_012917:569856:584904 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 584904, End: 584979, Length: 76

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3752619:37554503755450375552576Pectobacterium wasabiae WPP163, complete genometRNA-Phe2e-0650.8
NC_004547:1062410:10752231075223107529876Erwinia carotovora subsp. atroseptica SCRI1043, complete genometRNA-Phe2e-0650.8
NC_004547:667988:68858468858468865976Erwinia carotovora subsp. atroseptica SCRI1043, complete genometRNA-Phe2e-0650.8