Pre_GI: BLASTP Hits

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Query: NC_012917:4646491:4666541 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 4666541, End: 4667665, Length: 1125

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016514:2647984:2672911267291126740951185Enterobacter cloacae EcWSU1 chromosome, complete genomeC-5 sterol desaturase3e-102372
NC_014623:8798820:8800099880009988011991101Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesterol desaturase family protein7e-31135
NC_015703:6295500:631037663103766311284909Runella slithyformis DSM 19594 chromosome, complete genomefatty acid hydroxylase2e-29130
NC_014931:4490526:449052644905264491473948Variovorax paradoxus EPS chromosome, complete genomefatty acid hydroxylase4e-24112
NC_008596:2873675:287456428745642875436873Mycobacterium smegmatis str. MC2 155, complete genomeC-5 sterol desaturase1e-23111
NC_017030:8599515:8606441860644186076881248Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein6e-23108
NC_013222:2595315:261464026146402615602963Robiginitalea biformata HTCC2501, complete genomehypothetical protein6e-23108
NC_013730:1572889:158945715894571590353897Spirosoma linguale DSM 74, complete genomefatty acid hydroxylase9e-21101
NC_011001:163813:186525186525187442918Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein8e-2098.2
NC_007511:3371319:3371319337131933723381020Burkholderia sp. 383 chromosome 2, complete sequenceSterol desaturase-like1e-1997.4
NC_013960:452493:461392461392462267876Nitrosococcus halophilus Nc4 chromosome, complete genomefatty acid hydroxylase2e-1480.5
NC_018748:1400068:140109314010931402079987Emticicia oligotrophica DSM 17448 chromosome, complete genomefatty acid hydroxylase4e-1375.9
NC_011138:3182807:319177131917713192574804Alteromonas macleodii 'Deep ecotype', complete genomesterol desaturase-related protein6e-1272
NC_019940:929071:933337933337934113777Thioflavicoccus mobilis 8321 chromosome, complete genomesterol desaturase9e-1271.6
NC_016745:1472000:148880014888001489609810Oceanimonas sp. GK1 chromosome, complete genomesterol desaturase3e-1170.1
NC_013960:1693643:169871216987121699572861Nitrosococcus halophilus Nc4 chromosome, complete genomefatty acid hydroxylase8e-1168.6
NC_016112:2903767:291457029145702915568999Methylomicrobium alcaliphilum chromosome, complete genomeFatty acid hydroxylase6e-1168.6
NC_012721:2406874:241461124146112415411801Burkholderia glumae BGR1 chromosome 2, complete genomeSterol desaturase2e-1067
NC_010162:2469915:249091824909182491817900Sorangium cellulosum 'So ce 56', complete genomehypothetical protein2e-0963.9
NC_018080:3088866:311163231116323112111480Pseudomonas aeruginosa DK2 chromosome, complete genomesterol desaturase-like protein1e-0861.2
NC_018080:6048516:608088560808856081700816Pseudomonas aeruginosa DK2 chromosome, complete genomefatty acid hydroxylase2e-0860.8
NC_003296:903947:9155199155199166761158Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSMEMBRANE PROTEIN3e-0860.1
NC_010505:2690939:271569427156942716545852Methylobacterium radiotolerans JCM 2831, complete genomefatty acid hydroxylase3e-0860.1
NC_008705:1557711:156412315641231565097975Mycobacterium sp. KMS, complete genomeconserved hypothetical protein3e-0860.1
NC_008146:1535827:155981515598151560789975Mycobacterium sp. MCS, complete genomehypothetical protein3e-0860.1
NC_015186:2197236:226819622681962269035840Acidiphilium multivorum AIU301, complete genomehypothetical protein4e-0859.3
NC_008781:2925818:292673429267342927699966Polaromonas naphthalenivorans CJ2, complete genomehypothetical protein1e-0758.2
NC_015563:4911188:4925672492567249267961125Delftia sp. Cs1-4 chromosome, complete genomefatty acid hydroxylase2e-0757.4
NC_010002:2518599:2524226252422625253501125Delftia acidovorans SPH-1, complete genomefatty acid hydroxylase2e-0757.4
NC_009077:4774499:478026347802634781219957Mycobacterium sp. JLS, complete genomehypothetical protein1e-0757.4
NC_015711:5163000:517688951768895177716828Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein3e-0756.6
NC_004129:4596040:459730445973044598182879Pseudomonas fluorescens Pf-5, complete genomesterol desaturase family protein, putative3e-0756.2
NC_008343:1548020:155393615539361554880945Granulibacter bethesdensis CGDNIH1, complete genomesterol desaturase family protein4e-0756.2