Pre_GI: BLASTP Hits

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Query: NC_012917:4646491:4663326 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 4663326, End: 4664255, Length: 930

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:1719849:1737114173711417382261113Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein3e-26119
NC_007005:4515853:4519156451915645202681113Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein5e-24111
NC_010688:1908012:194854719485471949374828Xanthomonas campestris pv. campestris, complete genomehypothetical protein1e-1584.3
NC_003919:3060484:307580630758063076609804Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein3e-1582.8
NC_017986:409899:4241994241994252841086Pseudomonas putida ND6 chromosome, complete genomehypothetical protein2e-0860.1
NC_007498:2638671:2646511264651126480041494Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein1e-0757.8
NC_010625:229478:245003245003245821819Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencehypothetical protein2e-0757
NC_013854:237857:2378572378572393501494Azospirillum sp. B510, complete genomehypothetical protein2e-0653.5