Pre_GI: BLASTP Hits

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Query: NC_012917:2921932:2925977 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2925977, End: 2926066, Length: 90

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3117639:31257093125709312579890Pectobacterium wasabiae WPP163, complete genometRNA-Ser4e-0960.1
NC_004547:1970686:19891321989132198922190Erwinia carotovora subsp. atroseptica SCRI1043, complete genometRNA-Ser4e-0960.1
NC_014500:3023762:30311823031182303127190Dickeya dadantii 3937 chromosome, complete genometRNA-Ser3e-0857
NC_013592:1730505:17543831754383175447290Dickeya dadantii Ech586, complete genometRNA-Ser1e-0755.1
NC_012912:1788308:18170891817089181717890Dickeya zeae Ech1591, complete genometRNA-Ser1e-0755.1
NC_009439:2337024:23382122338212233830190Pseudomonas mendocina ymp, complete genometRNA-Ser8e-0752.4
NC_007005:2149275:21619072161907216199690Pseudomonas syringae pv. syringae B728a, complete genometRNA-Ser3e-0650.4
NC_015410:2838132:28601222860122286020887Pseudomonas mendocina NK-01 chromosome, complete genometRNA-Ser4e-0650.1
NC_017047:1796000:17966461796646179673590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser5e-0649.7
NC_017047:1796000:17960761796076179616590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser5e-0649.7