Pre_GI: BLASTP Hits

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Query: NC_012848:320883:340868 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,

Start: 340868, End: 341731, Length: 864

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007404:359764:359764359764360684921Thiobacillus denitrificans ATCC 25259, complete genomeCytochrome c oxidase cbb3-type, subunit III2e-45182
NC_015422:1163752:117270711727071173621915Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit III1e-42173
NC_011992:1038985:104442310444231045337915Acidovorax ebreus TPSY, complete genomecytochrome c oxidase, cbb3-type, subunit III1e-41169
NC_014910:3458475:347072634707263471646921Alicycliphilus denitrificans BC chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit iii7e-41167
NC_008782:1136732:114216711421671143081915Acidovorax sp. JS42, complete genomecytochrome c oxidase, cbb3-type, subunit III3e-39162
NC_009379:435404:448269448269449207939Polynucleobacter sp. QLW-P1DMWA-1, complete genomecytochrome c oxidase, cbb3-type, subunit III2e-38159
NC_021150:1965264:198571919857191986639921Azotobacter vinelandii CA6, complete genomecytochrome c oxidase, cbb3-type, subunit III4e-34145
NC_012560:1965251:198570619857061986626921Azotobacter vinelandii DJ, complete genomecytochrome c oxidase, cbb3-type, subunit III4e-34145
NC_007298:778723:785864785864786763900Dechloromonas aromatica RCB, complete genomeCytochrome c oxidase cbb3-type, subunit III1e-33143
NC_009052:2512373:254939025493902550358969Shewanella baltica OS155, complete genomecytochrome c oxidase, cbb3-type, subunit III2e-33142
NC_009092:2282437:229998822999882300959972Shewanella loihica PV-4, complete genomecytochrome c oxidase, cbb3-type, subunit III2e-33142
NC_014541:2122788:213793621379362138925990Ferrimonas balearica DSM 9799 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit III7e-33141
NC_016745:2229271:223221722322172233194978Oceanimonas sp. GK1 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit III1e-31137
NC_008702:1432952:146286814628681463761894Azoarcus sp. BH72, complete genomeprobable cytochrome c oxidase, cbb3-type,subunit III4e-31135
NC_005773:3851433:386830138683013869278978Pseudomonas syringae pv. phaseolicola 1448A, complete genomecytochrome c oxidase, cbb3-type, subunit III4e-28125
NC_007492:2035761:203768520376852038638954Pseudomonas fluorescens PfO-1, complete genomeCytochrome c oxidase cbb3-type, subunit III2e-27123
NC_009465:29735:421214212143023903Candidatus Vesicomyosocius okutanii HA, complete genomecbb3-type cytochrome c oxidase subunit III1e-25117
NC_013422:2004478:201355920135592014536978Halothiobacillus neapolitanus c2, complete genomecytochrome c oxidase, cbb3-type, subunit III2e-25116
NC_007005:4062311:408018940801894081166978Pseudomonas syringae pv. syringae B728a, complete genomeCytochrome c oxidase cbb3-type, subunit III2e-25115
NC_008095:6877388:688870668887066889236531Myxococcus xanthus DK 1622, complete genomecytochrome c oxidase, cbb3-type, subunit III8e-0961.2
NC_020126:7896447:791765079176507918201552Myxococcus stipitatus DSM 14675, complete genomecbb3-type cytochrome c oxidase subunit III2e-0860.1