Pre_GI: BLASTP Hits

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Query: NC_012668:2744393:2769385 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2769385, End: 2770854, Length: 1470

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009457:351512:3836903836903851591470Vibrio cholerae O395 chromosome 2, complete sequencetoxin co-regulated pilus biosynthesis outer membrane protein C0852
NC_017047:4379989:4388118438811843895661449Rahnella aquatilis HX2 chromosome, complete genometype II and III secretion system protein3e-34146
NC_015061:4286000:4294232429423242956801449Rahnella sp. Y9602 chromosome, complete genometype II and III secretion system protein3e-34146
NC_013716:4885776:4903603490360349050721470Citrobacter rodentium ICC168, complete genomeputative Type IV pilus biogenesis protein5e-31135
NC_015761:299386:3330553330553345031449Salmonella bongori NCTC 12419, complete genomepilus biosynthesis outer membrane lipoprotein6e-30132
NC_020063:528296:5377655377655392101446Enterobacteriaceae bacterium strain FGI 57, complete genometype II secretory pathway, component PulD3e-29129
NC_014618:1040381:1054655105465510561121458Enterobacter cloacae SCF1 chromosome, complete genometype IV pilus biogenesis protein3e-24113