Pre_GI: BLASTP Hits

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Query: NC_012668:1688500:1693378 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 1693378, End: 1693851, Length: 474

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017270:1755552:178979117897911790264474Vibrio cholerae LMA3984-4 chromosome chromosome I, completehypothetical protein6e-89325
NC_008700:3692333:369680336968033697276474Shewanella amazonensis SB2B, complete genomeconserved hypothetical protein1e-50198
NC_004578:5269194:526982752698275270303477Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-43174
NC_007005:5127414:512741451274145127890477Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF888e-43172
NC_019977:1353332:137330813733081373826519Methanomethylovorans hollandica DSM 15978, complete genomehypothetical protein3e-33140
NC_013158:200424:221730221730222227498Halorhabdus utahensis DSM 12940, complete genomeprotein of unknown function DUF882e-24111
NC_019748:42358:632126321263820609Stanieria cyanosphaera PCC 7437, complete genomeprotein of unknown function DUF883e-1477.4
NC_017082:5789534:580661658066165807233618Bradyrhizobium sp. S23321, complete genomehypothetical protein4e-1167.4
NC_011060:459615:478747478747479610864Pelodictyon phaeoclathratiforme BU-1, complete genomeprotein of unknown function DUF884e-1063.5
NC_006576:2328427:235207723520772352637561Synechococcus elongatus PCC 6301, complete genomehypothetical protein3e-0960.8
NC_010730:578493:5784935784935803231831Sulfurihydrogenibium sp. YO3AOP1, complete genome2e-0858.2
NC_007645:3478630:348300234830023483913912Hahella chejuensis KCTC 2396, complete genomehypothetical protein6e-0753.1
NC_015676:1361468:138372213837221384258537Methanosalsum zhilinae DSM 4017 chromosome, complete genomehypothetical protein2e-0651.6
NC_006177:46745:530895308953883795Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein5e-0650.4