Pre_GI: BLASTP Hits

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Query: NC_012660:4558122:4568020 Pseudomonas fluorescens SBW25 chromosome, complete genome

Start: 4568020, End: 4568520, Length: 501

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Isolated in 1989 from the leaf surface of a sugar beet plant grown at the University Farm, Wytham, Oxford, UK. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:2686551:273110927311092731615507Pseudomonas syringae pv. syringae B728a, complete genomeGAF3e-60230
NC_010501:1286971:1290341129034112915581218Pseudomonas putida W619, complete genomeGAF sensor signal transduction histidine kinase2e-25115
NC_007492:3180480:3188399318839931895201122Pseudomonas fluorescens PfO-1, complete genomeGAF Sensor Signal Transduction Histidine Kinase6e-24110
NC_003919:5056650:5059882505988250611381257Xanthomonas axonopodis pv. citri str. 306, complete genomesensor histidine kinase1e-1995.5
NC_017249:1476500:1485559148555914868391281Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-1994
NC_010172:5447189:5450363545036354522941932Methylobacterium extorquens PA1, complete genomePAS sensor protein1e-1375.5
NC_011757:5742290:5749559574955957514901932Methylobacterium chloromethanicum CM4, complete genometwo component transcriptional regulator, LuxR family1e-1272.4
NC_017138:1812000:1832078183207818332141137Bacillus megaterium WSH-002 chromosome, complete genomesignal transduction histidine kinase, nitrogen specific, NtrB4e-1063.9
NC_008702:2892605:289570728957072896642936Azoarcus sp. BH72, complete genomeGAF/GGDEF-domain containing protein1e-0858.9