Pre_GI: BLASTP Hits

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Query: NC_012125:4481808:4501479 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4501479, End: 4502159, Length: 681

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4368948:438617443861744386896723Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-133474
NC_004631:4381724:439909143990914399672582Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein6e-113406
NC_003198:4397074:441444144144414415022582Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein6e-113406
NC_010102:4477836:449716344971634497942780Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-40164
NC_016816:4232680:423336142333614234104744Pantoea ananatis LMG 5342, complete genomehypothetical protein9e-39160
NC_014121:398012:420610420610421353744Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-34143
NC_015567:313035:314780314780315496717Serratia sp. AS9 chromosome, complete genomehypothetical protein1e-33143
NC_014029:331919:349287349287350003717Yersinia pestis Z176003 chromosome, complete genomehypothetical protein7e-33140
NC_012779:305969:324506324506325228723Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-31134
NC_009832:4564752:456702845670284567747720Serratia proteamaculans 568, complete genomehypothetical protein6e-30130
NC_004547:611178:621156621156621848693Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein4e-24111
NC_013421:701005:736693736693737391699Pectobacterium wasabiae WPP163, complete genomehypothetical protein1e-23109
NC_009832:358291:360027360027360572546Serratia proteamaculans 568, complete genomehypothetical protein2e-21102
NC_011750:1978801:200340720034072004126720Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-1685.1
NC_009705:78000:929879298793670684Yersinia pseudotuberculosis IP 31758 plasmid_153kb, completehypothetical protein3e-1582
NC_012691:779826:801775801775802461687Tolumonas auensis DSM 9187, complete genomehypothetical protein5e-1581.3
NC_002940:78392:792317923179968738Haemophilus ducreyi 35000HP, complete genomehypothetical protein5e-1374.3
NC_014562:983398:991368991368992093726Pantoea vagans C9-1 chromosome, complete genomehypothetical protein9e-1373.6
NC_004129:5373886:538118153811815381870690Pseudomonas fluorescens Pf-5, complete genomehypothetical protein7e-0960.8