Pre_GI: BLASTP Hits

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Query: NC_012125:3879917:3892401 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 3892401, End: 3892514, Length: 114

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:3905875:392040739204073920520114Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-1477
NC_011750:1094000:109738510973851097732348Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS3 family3e-0650.4
NC_013364:3701895:375685437568543757201348Escherichia coli O111:H- str. 11128, complete genomeputative IS602 transposase OrfA3e-0650.4
NC_011415:1472500:149204614920461492393348Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-0650.4
CU928145:2973968:299168929916892992036348Escherichia coli 55989 chromosome, complete genometransposase ORF A, IS3 family3e-0650.4
NC_011748:2973968:299168929916892992036348Escherichia coli 55989, complete genometransposase ORF A, IS3 family3e-0650.4