Pre_GI: BLASTP Hits

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Query: NC_012125:1330066:1351483 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1351483, End: 1351662, Length: 180

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:368942:390208390208390387180Salmonella enterica subsp. enterica serovar Choleraesuis strNinZ1e-27121
NC_011094:593100:616143616143616322180Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-27119
NC_011083:374000:391880391880392059180Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein1e-25115
NC_016860:364981:385663385663385842180Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-25113
NC_010067:2529750:258205925820592582241183Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-25112