Pre_GI: BLASTP Hits

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Query: NC_011961:528837:540317 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 540317, End: 541240, Length: 924

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013501:1140390:115724611572461158160915Rhodothermus marinus DSM 4252, complete genomeUspA domain protein2e-21102
NC_013501:1140390:115544911554491156411963Rhodothermus marinus DSM 4252, complete genomeUspA domain protein4e-1995.5
NC_019974:1909244:193488119348811935372492Natronococcus occultus SP4, complete genomeuniversal stress protein UspA-like protein9e-1891.3
NC_014729:1908086:192070719207071921570864Halogeometricum borinquense DSM 11551 chromosome, complete genomeuniversal stress protein uspa-like protein1e-1687
NC_013966:25828:424244242443293870Haloferax volcanii DS2 plasmid pHV4, complete sequenceuspA domain protein1e-1584.3
NC_014041:595464:598111598111598938828Zunongwangia profunda SM-A87 chromosome, complete genomeuniversal stress protein family protein3e-1582.8
NC_014211:439611:442859442859443785927Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidUspA domain protein7e-1478.2
NC_015676:208393:209268209268209723456Methanosalsum zhilinae DSM 4017 chromosome, complete genomeUspA domain-containing protein1e-1377.4
NC_008571:185000:186948186948187775828Gramella forsetii KT0803, complete genomeuniversal stress protein family protein1e-1377.4
NC_015676:208393:210034210034210501468Methanosalsum zhilinae DSM 4017 chromosome, complete genomeUspA domain-containing protein2e-1377
NC_008697:202000:202379202379203209831Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceUspA domain protein3e-1376.3
NC_013525:1871795:188556718855671886457891Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeUspA domain protein7e-1375.1
NC_014002:1469653:148705014870501487499450Methanohalophilus mahii DSM 5219 chromosome, complete genomeUspA domain protein1e-1274.3
NC_015580:2444845:246226924622692463252984Novosphingobium sp. PP1Y, complete genomeuniversal stress protein1e-1274.3
NC_011026:3009500:301427630142763014740465Chloroherpeton thalassium ATCC 35110, complete genomeUspA domain protein1e-1273.9
NC_013174:2163947:218008121800812181034954Jonesia denitrificans DSM 20603, complete genomeUspA domain protein2e-1273.6
NC_016001:364666:370516370516371340825Flavobacterium branchiophilum, complete genomeuniversal stress protein UspA3e-1273.2
NC_013158:1620761:164035416403541641217864Halorhabdus utahensis DSM 12940, complete genomeUspA domain protein2e-1273.2
NC_012559:854507:859336859336860226891Laribacter hongkongensis HLHK9, complete genomeUspA3e-1272.4
NC_014151:813755:845151845151846077927Cellulomonas flavigena DSM 20109 chromosome, complete genomeUspA domain protein5e-1272
NC_017276:2240069:224169722416972242116420Sulfolobus islandicus REY15A chromosome, complete genomeUspA domain-containing protein6e-1271.6
NC_012726:2338500:234544623454462345865420Sulfolobus islandicus M.16.4 chromosome, complete genomeUspA domain-containing protein6e-1271.6
NC_012632:2415739:244793324479332448352420Sulfolobus islandicus M.16.27 chromosome, complete genomeUspA domain-containing protein6e-1271.6
NC_012623:160224:161852161852162271420Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeUspA domain-containing protein6e-1271.6
NC_015435:570980:584878584878585300423Metallosphaera cuprina Ar-4 chromosome, complete genomeUspA domain-containing protein9e-1271.2
NC_012589:842270:858605858605859036432Sulfolobus islandicus L.S.2.15, complete genomeUspA domain protein1e-1170.5
NC_007907:5056036:505921850592185059640423Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-1168.9
NC_011830:923424:962180962180962602423Desulfitobacterium hafniense DCB-2, complete genomeUspA domain protein5e-1168.6
NC_015666:2224717:224816122481612248580420Halopiger xanaduensis SH-6 chromosome, complete genomeUspA domain-containing protein6e-1168.6
NC_013967:827150:843073843073843501429Haloferax volcanii DS2 chromosome, complete genomeuspA domain protein7e-1168.2
NC_013923:45876:666986669867603906Natrialba magadii ATCC 43099 plasmid pNMAG01, complete sequenceUspA domain protein1e-1067.8
NC_002754:1661000:168174916817491682180432Sulfolobus solfataricus P2, complete genomehypothetical protein1e-1067.8
NC_009464:225400:228091228091228540450Uncultured methanogenic archaeon RC-I, complete genomeputative universal stress protein A2e-1066.6
NC_014297:1282302:130415013041501304596447Halalkalicoccus jeotgali B3 chromosome, complete genomeUspA domain protein2e-1066.2
NC_013894:1288282:130309913030991303896798Thermocrinis albus DSM 14484 chromosome, complete genomeUspA domain protein2e-1066.2
NC_018720:1611213:1633515163351516345611047Bifidobacterium asteroides PRL2011 chromosome, complete genomeputative, UspA domain protein4e-1065.5
NC_015676:1530000:153322015332201533681462Methanosalsum zhilinae DSM 4017 chromosome, complete genomeUspA domain-containing protein4e-1065.5
NC_014248:1072473:109099010909901091421432Nostoc azollae 0708 chromosome, complete genomeUspA domain-containing protein5e-1065.5
NC_015666:1849618:185648718564871856939453Halopiger xanaduensis SH-6 chromosome, complete genomeUspA domain-containing protein6e-1065.1
NC_011901:3363500:338415033841503385043894Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeuniversal stress protein6e-1065.1
NC_019771:2945719:296318029631802963608429Anabaena cylindrica PCC 7122, complete genomeUspA domain-containing protein7e-1064.7
NC_007512:1459685:146458914645891465047459Pelodictyon luteolum DSM 273, complete genomeuniversal stress protein family1e-0963.9
NC_013721:430000:4300894300894311141026Gardnerella vaginalis 409-05, complete genomeuniversal stress family protein1e-0963.9
NC_015589:1439794:144344914434491443868420Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeUspA domain-containing protein2e-0963.5
NC_007963:1190847:124041112404111241286876Chromohalobacter salexigens DSM 3043, complete genomeUspA2e-0963.5
NC_012691:2614603:270652627065262707020495Tolumonas auensis DSM 9187, complete genomeUspA domain protein2e-0963.2
NC_015672:101878:101878101878102345468Flexistipes sinusarabici DSM 4947 chromosome, complete genomeUspA domain-containing protein2e-0963.2
NC_013202:1144192:116524411652441165714471Halomicrobium mukohataei DSM 12286, complete genomeUspA domain protein2e-0963.2
NC_014151:1373937:138687813868781387762885Cellulomonas flavigena DSM 20109 chromosome, complete genomeUspA domain protein2e-0963.2
NC_020450:875757:879305879305879730426Lactococcus lactis subsp. lactis IO-1 DNA, complete genomehypothetical protein3e-0962.8
NC_015672:101878:102383102383102850468Flexistipes sinusarabici DSM 4947 chromosome, complete genomeUspA domain-containing protein3e-0962.8
NC_008702:1432952:146648414664841466927444Azoarcus sp. BH72, complete genomeputative universal stress protein f3e-0962.8
NC_013595:5333000:534234653423465343215870Streptosporangium roseum DSM 43021, complete genomeUspA domain-containing protein4e-0962.4
NC_012483:483425:520592520592521485894Acidobacterium capsulatum ATCC 51196, complete genomeuniversal stress protein family protein5e-0962
NC_013939:492959:494282494282494734453Deferribacter desulfuricans SSM1, complete genomeuniversal stress protein7e-0961.6
NC_002607:1868371:188918718891871889660474Halobacterium sp. NRC-1, complete genomehypothetical protein7e-0961.6
NC_000964:4015005:403081540308154031261447Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein7e-0961.6
NC_020244:3856526:387029238702923870738447Bacillus subtilis XF-1, complete genomephosphate starvation protein7e-0961.6
NC_014307:2760347:278444227844422784882441Ralstonia solanacearum CFBP2957 chromosome, complete genomeuniversal stress protein, uspa family6e-0961.6
NC_020389:714178:735141735141736028888Methanosarcina mazei Tuc01, complete genomeUniversal stress protein6e-0961.6
NC_014479:3825195:385247438524743852920447Bacillus subtilis subsp. spizizenii str. W23 chromosome, completephosphate starvation protein (universal stress protein A family)8e-0961.2
NC_019757:5931500:594172259417225942153432Cylindrospermum stagnale PCC 7417, complete genomeuniversal stress protein UspA-like protein8e-0961.2
NC_009464:1531847:153306315330631533512450Uncultured methanogenic archaeon RC-I, complete genomeuniversal stress protein A9e-0961.2
NC_013732:136673:140390140390140833444Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequenceUspA domain protein1e-0861.2
NC_015172:3160249:320742232074223207847426Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeUspA domain-containing protein1e-0860.8
NC_014311:1545175:156624315662431566698456Ralstonia solanacearum PSI07 chromosome, complete genomeuniversal stress protein (Usp)1e-0860.8
NC_017195:3815491:383100838310083831454447Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeuniversal stress family protein1e-0860.8
NC_014976:2024364:203866220386622039108447Bacillus subtilis BSn5 chromosome, complete genomephosphate starvation protein1e-0860.8
NC_015683:2469481:247840524784052479334930Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein2e-0859.7
NC_010676:304405:323082323082323549468Burkholderia phytofirmans PsJN chromosome 2, complete sequenceUspA domain protein2e-0859.7
NC_013406:3650300:365649236564923656923432Paenibacillus sp. Y412MC10 chromosome, complete genomeUspA domain-containing protein3e-0859.7
NC_009009:540992:555037555037555489453Streptococcus sanguinis SK36, complete genomeUniversal stress protein family, putative3e-0859.3
NC_013411:735838:754431754431754877447Geobacillus sp. Y412MC61, complete genomeUspA domain protein3e-0859.3
NC_014915:2847680:284768028476802848126447Geobacillus sp. Y412MC52 chromosome, complete genomeUspA domain-containing protein3e-0859.3
NC_014910:2930860:294217029421702942733564Alicycliphilus denitrificans BC chromosome, complete genomeuspa domain-containing protein3e-0859.3
NC_013922:2110894:212810221281022128524423Natrialba magadii ATCC 43099 chromosome, complete genomeUspA domain protein3e-0859.3
NC_015726:2177783:218723421872342187671438Cupriavidus necator N-1 chromosome 1, complete sequenceuniversal stress protein UspA3e-0859.3
NC_015510:3543352:356778535677853568720936Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeUspA domain-containing protein4e-0858.9
NC_011001:302500:329025329025329495471Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative universal stress protein5e-0858.9
NC_009075:15017:449924499245459468Burkholderia pseudomallei 668 chromosome II, complete sequenceuniversal stress protein family6e-0858.5
NC_017075:1233377:123703612370361237479444Rubrivivax gelatinosus IL144, complete genomehypothetical protein6e-0858.5
NC_008711:424482:4235034235034245401038Arthrobacter aurescens TC1, complete genomeputative universal stress family domain protein8e-0858.2
NC_014314:404315:418463418463418948486Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeUspA domain-containing protein7e-0858.2
NC_015723:1448000:144828214482821448737456Cupriavidus necator N-1 chromosome 2, complete sequenceuniversal stress protein UspA family protein7e-0858.2
NC_014614:284005:314369314369314800432Clostridium sticklandii, complete genomeputative universal stress protein family1e-0757.8
NC_008782:1136732:113673211367321137175444Acidovorax sp. JS42, complete genomeUspA domain protein1e-0757.4
NC_011992:1038985:103898510389851039428444Acidovorax ebreus TPSY, complete genomeUspA domain protein1e-0757.4
NC_014206:771765:790185790185790631447Geobacillus sp. C56-T3 chromosome, complete genomeUspA domain-containing protein1e-0757.4
NC_013595:5333000:535132253513225352200879Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-0757.4
NC_014926:1381152:138566713856671386137471Thermovibrio ammonificans HB-1 chromosome, complete genomeUspA domain-containing protein2e-0757
NC_019974:192862:215004215004215441438Natronococcus occultus SP4, complete genomeuniversal stress protein UspA-like protein2e-0757
NC_000918:707801:709946709946710791846Aquifex aeolicus VF5, complete genomehypothetical protein1e-0757
NC_014118:1528851:152982015298201530287468Burkholderia sp. CCGE1002 chromosome chromosome 2, completeUspA domain protein2e-0756.2
NC_019974:1020500:103280710328071033241435Natronococcus occultus SP4, complete genomeuniversal stress protein UspA-like protein3e-0756.2
NC_004369:2968251:297403429740342974990957Corynebacterium efficiens YS-314, complete genomehypothetical protein4e-0755.8
NC_014804:1354970:136961613696161370458843Thermococcus barophilus MP chromosome, complete genomehypothetical protein5e-0755.5
NC_014931:3642779:364425336442533644708456Variovorax paradoxus EPS chromosome, complete genomeUspA domain-containing protein5e-0755.5
NC_009376:1335074:134774313477431348156414Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeUspA domain-containing protein5e-0755.5
NC_003295:199354:207416207416207916501Ralstonia solanacearum GMI1000, complete genomehypothetical protein4e-0755.5
NC_013173:1712138:173703517370351737550516Desulfomicrobium baculatum DSM 4028, complete genomeUspA domain protein4e-0755.5
NC_016885:603269:608097608097608510414Pyrobaculum oguniense TE7 chromosome, complete genomeUniversal stress protein UspA-related nucleotide-binding protein7e-0755.1
NC_015422:1163752:116727911672791167722444Alicycliphilus denitrificans K601 chromosome, complete genomeUspA domain-containing protein7e-0755.1
NC_014910:3458475:347663134766313477074444Alicycliphilus denitrificans BC chromosome, complete genomeuspa domain-containing protein7e-0755.1
NC_013446:2961647:298434629843462984819474Comamonas testosteroni CNB-2, complete genomeUspA8e-0754.7
NC_019903:421000:425181425181425609429Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,universal stress protein UspA-like protein9e-0754.7
NC_014735:1:758575858031447Halogeometricum borinquense DSM 11551 plasmid pHBOR01, completeuniversal stress protein UspA-like protein1e-0654.3
NC_020410:3715210:373268437326843733130447Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completephosphate starvation protein (universal stress protein A family)1e-0654.3
NC_019842:3755275:377854337785433778989447Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein1e-0654.3
NC_005125:2811986:284736128473612847852492Gloeobacter violaceus PCC 7421, complete genomehypothetical protein1e-0653.9
NC_014551:3797047:379810537981053798551447Bacillus amyloliquefaciens DSM 7, complete genomephosphate starvation protein (universal stress protein A family)2e-0653.5
NC_017188:3764061:376632637663263766772447Bacillus amyloliquefaciens TA208 chromosome, complete genomephosphate starvation protein2e-0653.5
NC_017190:3812065:381312338131233813569447Bacillus amyloliquefaciens LL3 chromosome, complete genomephosphate starvation protein2e-0653.5
NC_017191:3766960:376801837680183768464447Bacillus amyloliquefaciens XH7 chromosome, complete genomephosphate starvation protein2e-0653.5
NC_002932:937157:954938954938955351414Chlorobium tepidum TLS, complete genomeuniversal stress protein family2e-0653.5
NC_009376:2074325:209196820919682092354387Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeUspA domain-containing protein3e-0653.1
NC_013524:1150725:1168816116881611702131398Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeCBS domain containing membrane protein2e-0653.1
NC_000961:1366000:136927813692781369904627Pyrococcus horikoshii OT3, complete genomehypothetical protein2e-0653.1
NC_000916:952663:970124970124970567444Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein2e-0653.1
NC_020272:162779:172131172131172577447Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein2e-0653.1
NC_013172:783097:783097783097784065969Brachybacterium faecium DSM 4810, complete genomeuniversal stress protein UspA-like protein2e-0653.1
NC_016745:2028424:206914220691422070005864Oceanimonas sp. GK1 chromosome, complete genomeUspA domain-containing protein2e-0653.1
NC_015381:2405446:240847924084792409003525Burkholderia gladioli BSR3 chromosome 1, complete sequenceUspA protein3e-0652.8
NC_020541:2264521:227280022728002273213414Rhodanobacter sp. 2APBS1, complete genomeuniversal stress protein UspA-like protein5e-0652.4
NC_002607:1221158:123640412364041236835432Halobacterium sp. NRC-1, complete genomehypothetical protein5e-0652.4
NC_010364:1215489:122564412256441226075432Halobacterium salinarum R1, complete genomeupsA domain protein5e-0652.4
NC_015185:140588:159137159137159607471Desulfurobacterium thermolithotrophum DSM 11699 chromosome,UspA domain-containing protein4e-0652.4
NC_002937:614000:614145614145614567423Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeuniversal stress protein family4e-0652.4
NC_003364:359500:376559376559376960402Pyrobaculum aerophilum str. IM2, complete genomeconserved protein (probable universal stress protein homolog)4e-0652.4
NC_007347:1239982:125122212512221251683462Ralstonia eutropha JMP134 chromosome 1, complete sequenceUspA7e-0651.6
NC_009720:2489003:249120724912072491722516Xanthobacter autotrophicus Py2, complete genomeUspA domain-containing protein7e-0651.6
NC_010628:6165632:616664161666416167066426Nostoc punctiforme PCC 73102, complete genomeUspA domain protein8e-0651.6
NC_007348:1903937:191610219161021916545444Ralstonia eutropha JMP134 chromosome 2, complete sequenceUspA9e-0651.2
NC_015875:1926981:194223819422381942690453Streptococcus pseudopneumoniae IS7493 chromosome, complete genomeuniversal stress protein1e-0551.2