Pre_GI: BLASTP Hits

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Query: NC_011961:304158:336318 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 336318, End: 336953, Length: 636

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019978:2071435:209163820916382092285648Halobacteroides halobius DSM 5150, complete genomeK+ transport system, NAD-binding component2e-48191
NC_014378:425779:427137427137427787651Acetohalobium arabaticum DSM 5501 chromosome, complete genomeTrkA-N domain protein7e-45180
NC_019978:2071435:208953220895322090179648Halobacteroides halobius DSM 5150, complete genomeK+ transport system, NAD-binding component1e-42172
NC_020995:2255521:225552122555212256189669Enterococcus casseliflavus EC20, complete genometrk system potassium uptake protein TrkA3e-38158
UCMB5137:2128500:212850321285032129171669Bacillus atrophaeus UCMB-5137potassium uptake protein1e-36153
NC_015759:760671:776224776224776895672Weissella koreensis KACC 15510 chromosome, complete genomeK+ transport system, NAD-binding component2e-36152
NC_014976:1174430:119718311971831197851669Bacillus subtilis BSn5 chromosome, complete genomepotassium uptake protein5e-36150
NC_014210:618500:639013639013639684672Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,TrkA-N domain protein5e-36150
NC_013161:4209554:421607742160774216766690Cyanothece sp. PCC 8802, complete genomeTrkA-N domain protein2e-35148
NC_008702:3375027:339815133981513398831681Azoarcus sp. BH72, complete genomeputative potassium uptake protein1e-34146
NC_014221:266638:280250280250280921672Truepera radiovictrix DSM 17093 chromosome, complete genomeTrkA-N domain protein7e-34143
NC_014965:2200974:221808822180882218750663Vibrio vulnificus MO6-24/O chromosome I, complete sequencepotassium uptake protein, integral membrane component, KtrA1e-33143
NC_004347:4441110:446058144605814461225645Shewanella oneidensis MR-1, complete genomepotassium uptake protein KtrA, putative2e-30132
NC_013441:4539035:454864045486404549281642Gordonia bronchialis DSM 43247, complete genomeTrkA-N domain protein8e-28123
NC_007929:67810:877188771888356639Lactobacillus salivarius subsp. salivarius UCC118, complete genomePotassium uptake protein1e-27122
NC_014246:1545214:156768715676871568391705Mobiluncus curtisii ATCC 43063 chromosome, complete genomeTrk family potassium (K+) transporter NAD+ binding protein5e-27120
NC_018604:2377549:239532623953262396012687Brachyspira pilosicoli WesB complete genomepotassium uptake protein TrkA8e-25113
NC_019908:2285819:228931922893192290005687Brachyspira pilosicoli P43/6/78 chromosome, complete genomepotassium uptake protein TrkA8e-25113
NC_007802:3575739:361356836135683614230663Jannaschia sp. CCS1, complete genomeTrkA2e-24112
NC_012781:3087467:310470231047023105352651Eubacterium rectale ATCC 33656, complete genomehypothetical protein1e-22106
NC_013440:5543667:554472555447255545390666Haliangium ochraceum DSM 14365, complete genomeTrkA-N domain protein1e-21103
NC_014166:33138:492584925849905648Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeTrkA-N domain-containing protein2e-21102
NC_014933:2195683:221363022136302214316687Bacteroides helcogenes P 36-108 chromosome, complete genomeTrkA-N domain protein7e-21100
NC_011295:929293:951307951307951963657Coprothermobacter proteolyticus DSM 5265, complete genometrk system potassium uptake protein TrkA7e-1994
NC_004663:6104875:611499161149916115677687Bacteroides thetaiotaomicron VPI-5482, complete genomeputative K+ uptake system protein6e-1994
NC_010741:12542:290652906529775711Treponema pallidum subsp. pallidum SS14, complete genomehypothetical protein8e-1993.6
NC_000919:12545:290682906829778711Treponema pallidum subsp. pallidum str. Nichols, complete genomehypothetical protein8e-1993.6
NC_016842:1:290762907629786711Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeTrk family potassium (K+) transporter, NAD+ binding protein8e-1993.6
NC_016843:1:290762907629786711Treponema pallidum subsp. pertenue str. Gauthier chromosome,Trk family potassium (K+) transporter, NAD+ binding protein8e-1993.6
NC_016844:12545:290732907329783711Treponema pallidum subsp. pallidum DAL-1 chromosome, completeTrk family potassium (K+) transporter, NAD+ binding protein8e-1993.6
NC_016848:12548:290762907629786711Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeTrk family potassium (K+) transporter, NAD+ binding protein8e-1993.6
NC_017268:1:290742907429784711Treponema pallidum subsp. pallidum str. Chicago chromosome,TrkA domain protein8e-1993.6
NC_021508:12543:290712907129781711Treponema pallidum subsp. pallidum SS14, complete genomeTrk family potassium (K+) transporter, NAD+ binding protein8e-1993.6
NC_016807:551895:559327559327560022696Mycoplasma pneumoniae 309, complete genomeNa, K uptake transporter family protein2e-1479
NC_000912:553539:564390564390565085696Mycoplasma pneumoniae M129, complete genomeKtrA, K+ Na+ uptake2e-1479
NC_011025:46903:488244882449510687Mycoplasma arthritidis 158L3-1, complete genomepotassium uptake protein3e-1478.6
NC_015921:757776:761125761125761907783Borrelia bissettii DN127 chromosome, complete genometrkA-C domain-containing protein2e-1272.4
NC_011296:801612:8023268023268033481023Thermodesulfovibrio yellowstonii DSM 11347, complete genomepotassium uptake protein, TrkA family2e-0858.9
NC_015167:569569:5961235961235971361014Cellulophaga lytica DSM 7489 chromosome, complete genomeTrkA-N domain-containing protein6e-0857.8
NC_016630:1890917:1903072190307219044451374Filifactor alocis ATCC 35896 chromosome, complete genomepotassium uptake protein, Trk family7e-0857.4
NC_014122:205112:220070220070221065996Methanocaldococcus infernus ME chromosome, complete genomeTrkA-N domain protein4e-0755.1
NC_010364:733558:7374147374147388681455Halobacterium salinarum R1, complete genomehypothetical protein1e-0652.8
NC_002607:742886:7471517471517486051455Halobacterium sp. NRC-1, complete genomehypothetical protein1e-0652.8
NC_015320:1342105:137401513740151375001987Archaeoglobus veneficus SNP6 chromosome, complete genomeTrkA-N domain-containing protein4e-0651.6
NC_020409:437781:4919364919364933061371Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTrkA-N domain protein8e-0650.4
NC_003413:181525:185009185009185701693Pyrococcus furiosus DSM 3638, complete genometrk system potassium uptake - like protein9e-0650.4