Pre_GI: BLASTP Hits

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Query: NC_011147:2085241:2088146 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2088146, End: 2088391, Length: 246

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2090058:209296320929632093208246Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-40164
NC_016810:775649:796623796623796994372Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-40164
NC_016863:776734:797693797693798079387Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein1e-40164
NC_016857:775649:796608796608796994387Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein1e-40164
NC_016856:776735:797694797694798080387Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein1e-40164
NC_003197:776238:797197797197797583387Salmonella typhimurium LT2, complete genomeputative inner membrane protein1e-40164
NC_003198:751779:772118772118772363246Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-40164
NC_004631:2205821:220872622087262208971246Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-40164