Pre_GI: BLASTP Hits

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Query: NC_011147:1057259:1079793 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1079793, End: 1079933, Length: 141

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:1063249:108578310857831085923141Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-2096.3
NC_004631:1091303:110316411031641103340177Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-1580.5
NC_003198:1867456:187779218777921877968177Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-1580.5
NC_016857:1903426:191376619137661913939174Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein6e-1579.7
NC_016856:1957263:196760319676031967776174Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein6e-1579.7
NC_003197:1945858:195619819561981956371174Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein6e-1579.7
NC_016863:1905454:191582719158271915967141Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein6e-1579.3
NC_012125:1897611:192043819204381920578141Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein6e-1579.3
NC_006905:1961774:197216419721641972304141Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-1477.8