Pre_GI: BLASTP Hits

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Query: NC_011094:1584038:1595623 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 1595623, End: 1596573, Length: 951

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009483:2136424:2140986214098621425271542Geobacter uraniireducens Rf4 chromosome, complete genomeSEFIR domain-containing protein6e-35148
NC_019842:484933:5093985093985106331236Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,protein-transmembrane prediction2e-28126
NC_015690:1186545:1196281119628111976991419Paenibacillus mucilaginosus KNP414 chromosome, complete genomeSEFIR domain-containing protein1e-24114
NC_015975:380500:391051391051391968918Lactobacillus ruminis ATCC 27782 chromosome, complete genomeSEFIR domain containing protein6e-22105
NC_016835:128757:1346041346041360401437Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,SEFIR domain-containing protein3e-21102
NC_016803:2431672:2447230244723024487021473Desulfovibrio desulfuricans ND132 chromosome, complete genomeSEFIR domain-containing protein4e-1995.5
NC_016830:1182765:119500711950071195906900Pseudomonas fluorescens F113 chromosome, complete genomesefir domain protein6e-1995.1
NC_002967:1844000:1850567185056718517631197Treponema denticola ATCC 35405, complete genomehypothetical protein8e-1994.7
NC_008752:558828:5681165681165697771662Acidovorax avenae subsp. citrulli AAC00-1, complete genomeSEFIR domain protein2e-1789.7
NC_013440:3813132:3824265382426538257341470Haliangium ochraceum DSM 14365, complete genomeSEFIR domain protein3e-1789.4
NC_014483:1604000:1617871161787116192111341Paenibacillus polymyxa E681 chromosome, complete genomehypothetical protein1e-1687
NC_013440:1317982:1322383132238313239661584Haliangium ochraceum DSM 14365, complete genomeSEFIR domain protein1e-1273.9
NC_016826:1783828:180479218047921805760969Streptococcus infantarius subsp. infantarius CJ18 chromosome,SEFIR domain-containing protein2e-1273.6
NC_016749:1914481:194004219400421941010969Streptococcus macedonicus ACA-DC 198, complete genomehypothetical protein2e-1273.6
NC_013204:929434:945989945989946930942Eggerthella lenta DSM 2243, complete genomehypothetical protein4e-1065.5
NC_013421:701005:714261714261714812552Pectobacterium wasabiae WPP163, complete genomehypothetical protein6e-0962
NC_015216:1102837:111373211137321114694963Methanobacterium sp. AL-21 chromosome, complete genomeTiR protein3e-0859.3
NC_007517:1998342:2006838200683820102873450Geobacter metallireducens GS-15, complete genomehypothetical protein2e-0757