Pre_GI: BLASTP Hits

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Query: NC_011092:76993:82199 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 82199, End: 82840, Length: 642

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world.This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:1075535:111699411169941117653660Shigella flexneri 2002017 chromosome, complete genomeChloramphenicol acetyltransferase1e-55215
NC_016860:4055117:406728340672834067942660Salmonella enterica subsp. enterica serovar Typhimurium strchloramphenicol acetyltransferase1e-55215
NC_013365:92973:119115119115119774660Escherichia coli O111:H- str. 11128 plasmid pO111_1, completechloramphenicol acetyltransferase1e-55215
NC_011586:268927:297189297189297848660Acinetobacter baumannii AB0057 chromosome, complete genomechloramphenicol acetyltransferase1e-55215
NC_010410:3606826:363735436373543638013660Acinetobacter baumannii AYE, complete genomeChloramphenicol acetyltransferase (CAT)1e-55215
NC_009436:1679265:168629916862991686976678Enterobacter sp. 638, complete genomechloramphenicol acetyltransferase6e-53206
NC_009349:78000:780487804810171623669Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete2e-49194
NC_014376:2921769:293156329315632932195633Clostridium saccharolyticum WM1 chromosome, complete genomeChloramphenicol O-acetyltransferase3e-47188
NC_009349:78000:946439464395269627Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completechloramphenicol acetyltransferase1e-46186
NC_013316:4095905:410887841088784109522645Clostridium difficile R20291, complete genomechloramphenicol o-acetyltransferase1e-33143
NC_013315:4015119:402809240280924028736645Clostridium difficile CD196 chromosome, complete genomechloramphenicol o-acetyltransferase1e-33143
NC_017179:4023139:403611840361184036756639Clostridium difficile BI1, complete genomechloramphenicol o-acetyltransferase1e-33142
NC_016048:3063888:308744830874483088104657Oscillibacter valericigenes Sjm18-20, complete genomeputative chloramphenicol acetyltransferase4e-30130
NC_015687:250768:266319266319266957639Clostridium acetobutylicum DSM 1731 chromosome, complete genomechloramphenicol acetyltransferase7e-22103
NC_003030:249648:266321266321266959639Clostridium acetobutylicum ATCC 824, complete genomeChloramphenicol acetyltransferase7e-22103
NC_014376:3064787:308570430857043086342639Clostridium saccharolyticum WM1 chromosome, complete genomechloramphenicol acetyltransferase1e-1790.1
NC_016940:190986:207964207964208584621Saprospira grandis str. Lewin chromosome, complete genomechloramphenicol acetyltransferase2e-1685.5
NC_010655:373437:390524390524391159636Akkermansia muciniphila ATCC BAA-835, complete genomechloramphenicol acetyltransferase3e-1685.1
NC_009615:3993187:401522240152224015845624Parabacteroides distasonis ATCC 8503 chromosome, complete genomechloramphenicol acetyltransferase8e-1373.9
NC_011749:34056:475024750247777276Escherichia coli UMN026 plasmid p1ESCUM, complete sequence8e-1167
NC_016048:2907702:292502729250272925635609Oscillibacter valericigenes Sjm18-20, complete genomeputative acetyltransferase2e-0858.9