Pre_GI: BLASTP Hits

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Query: NC_011080:333121:344662 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 344662, End: 344802, Length: 141

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011094:334267:341784341784341924141Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-1891.3
NC_011149:309556:322136322136322276141Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-1891.3
NC_006905:326517:335477335477335617141Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-1891.3
NC_016832:2612809:263758426375842637724141Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein8e-1889
NC_011205:329155:344451344451344600150Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-1787
NC_016831:4517850:453608545360854536381297Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein9e-0752.4
NC_011205:4718239:473627647362764736572297Salmonella enterica subsp. enterica serovar Dublin str. CT_020218539e-0752.4