Pre_GI: BLASTP Hits

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Query: NC_011080:333121:341372 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 341372, End: 341647, Length: 276

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:332060:339302339302339577276Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein4e-43172
NC_016857:329849:338806338806339081276Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein4e-43172
NC_016856:332771:340013340013340288276Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein4e-43172
NC_003197:332086:339328339328339603276Salmonella typhimurium LT2, complete genomehypothetical protein4e-43172
NC_011083:338910:346859346859347122264Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein7e-35145
NC_016860:332087:339329339329339556228Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-33140
NC_011149:309556:318927318927319184258Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-31132
NC_011205:329155:341189341189341446258Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein6e-28122
NC_011294:311796:317103317103317360258Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein6e-28122
NC_006905:326517:332206332206332463258Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein5e-28122
NC_012125:326909:332076332076332333258Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein5e-28122
NC_013421:385930:393088393088393399312Pectobacterium wasabiae WPP163, complete genomeDomain of unknown function DUF1813 HSP20-like protein1e-1788.2
NC_016845:4498097:452407745240774524370294Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein8e-1269.3
NC_011083:338910:348325348325348498174Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-1167.8
NC_016831:2667561:268641626864162686586171Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-1167
NC_013892:1272448:128445512844551284775321Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-0961.2
NC_015663:1356982:138018813801881380475288Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-0858.5
NC_014228:2883500:289921528992152899535321Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0857.8
NC_014228:1336466:134019513401951340548354Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0857.8
NC_014228:2883500:289206628920662892386321Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein3e-0857.4
NC_010468:4059436:407232540723254072666342Escherichia coli ATCC 8739, complete genomeDomain of unknown function DUF1813, HSP20-like protein6e-0856.2
NC_012759:4501206:451600645160064516347342Escherichia coli BW2952 chromosome, complete genomeendoribonuclease SymE2e-0754.7
AC_000091:4569379:458417945841794584577399Escherichia coli W3110 DNA, complete genomehypothetical protein2e-0754.3
NC_015968:74124:821778217782461285Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein2e-0650.8
NC_012962:1068102:108993910899391090262324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE24e-0650.1
NC_012962:1068102:109771210977121098035324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE34e-0650.1
NC_012962:1068102:108243110824311082754324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE5e-0650.1
NC_012962:1068102:110472011047201105043324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE45e-0650.1