Pre_GI: BLASTP Hits

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Query: NC_011080:333121:340837 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 340837, End: 341319, Length: 483

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:332060:338812338812339249438Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein4e-77286
NC_016860:332087:338839338839339276438Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein4e-77286
NC_016857:329849:338316338316338753438Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein4e-77286
NC_016856:332771:339523339523339960438Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein4e-77286
NC_003197:332086:338838338838339275438Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein4e-77286
NC_010465:429095:447390447390447878489Yersinia pseudotuberculosis YPIII, complete genomeputative cytoplasmic protein2e-52204
NC_011094:334267:339769339769340251483Salmonella enterica subsp. enterica serovar Schwarzengrund strphosphotriesterase5e-47186
NC_017046:329847:338503338503338751249Salmonella enterica subsp. enterica serovar Typhimurium str. 7985e-40162
NC_016043:1043366:104669510466951047201507Taylorella asinigenitalis MCE3 chromosome, complete genomeputative cytoplasmic protein9e-1475.9
NC_014914:1678973:168372616837261684208483Taylorella equigenitalis MCE9 chromosome, complete genomeputative cytoplasmic protein4e-1063.9