Pre_GI: BLASTP Hits

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Query: NC_011080:1750000:1761997 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1761997, End: 1763106, Length: 1110

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016810:1709695:1722495172249517236071113Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein0749
NC_004631:1623511:1636130163613016374281299Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein0749
NC_003198:1336894:1343754134375413450521299Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein0749
NC_016856:1763640:1775622177562217767311110Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein0748
NC_016857:1709695:1722498172249817236071110Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein0748
NC_016863:1711832:1723814172381417249231110Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein0748
NC_017046:1709578:1722381172238117234901110Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein0748
NC_016860:1752000:1763335176333517644441110Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein0745
NC_011149:1429523:1436382143638214374911110Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein0745
NC_011094:1726000:1738817173881717399261110Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein0741
NC_006511:1273162:1280019128001912813171299Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC0729
NC_006905:1766000:1778827177882717798821056Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein0712