Pre_GI: BLASTP Hits

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Query: NC_010660:86445:108794 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 108794, End: 109420, Length: 627

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:1997891:200581220058122006402591Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector EspM-like protein6e-0754.3
NC_013361:1754346:177079417707941771384591Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector EspM7e-0753.9
NC_013008:1715831:173224317322431732833591Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector7e-0753.9
NC_011353:1716037:173326817332681733858591Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeEspM3 protein7e-0753.9
NC_002695:1794635:181167718116771812267591Escherichia coli O157:H7 str. Sakai, complete genomebfpT-regulated chaperone-like protein7e-0753.9
NC_002655:2264773:227491022749102275500591Escherichia coli O157:H7 EDL933, complete genomeputative chaperone protein7e-0753.9
NC_011353:4688000:470513447051344705619486Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeMap protein1e-0653.1
NC_002695:4584177:460203046020304602641612Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-0652.8
NC_002655:4653160:467101346710134671624612Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-0652.8
NC_013008:4643825:466117546611754661786612Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III effector protein1e-0652.8
NC_013941:4470932:448953444895344490145612Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-0652.8
NC_013361:5319497:535132753513275351938612Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector Map3e-0652
NC_013353:3669500:369194836919483692559612Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector Map3e-0652
AP010958:3669500:369194836919483692559612Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector Map3e-0652