Pre_GI: BLASTP Hits

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Query: NC_010658:4257310:4257849 Shigella boydii CDC 3083-94, complete genome

Start: 4257849, End: 4260272, Length: 2424

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015224:4101939:4114254411425441167222469Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,glycerol-3-phosphate acyltransferase01289
NC_006370:166000:1664311664311688962466Photobacterium profundum SS9 chromosome 1, complete sequenceglycerol-3-phosphate acyltransferase0976
NC_010278:1235934:1248312124831212507862475Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,glycerol-3-phosphate acyltransferase0949
NC_010519:796229:8177848177848202312448Haemophilus somnus 2336 chromosome, complete genomeglycerol-3-phosphate acyltransferase0949
NC_015410:3701000:3714984371498437174672484Pseudomonas mendocina NK-01 chromosome, complete genomeglycerol-3-phosphate acyltransferase3e-165582
NC_009439:3394174:3414000341400034164832484Pseudomonas mendocina ymp, complete genomeglycerol-3-phosphate acyltransferase1e-163577
NC_016893:694587:6945876945876969502364Wigglesworthia glossinidia endosymbiont of Glossina morsitansglycerol-3-phosphate O-acyltransferase4e-147522
NC_004344:129798:1465881465881489722385Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,glycerol-3-phosphate acyltransferase1e-141504
NC_003919:5023500:5038016503801650406732658Xanthomonas axonopodis pv. citri str. 306, complete genomeglycerol-3-phosphate acyltransferase5e-133475
NC_017271:4764404:4781723478172347843832661Xanthomonas campestris pv. raphani 756C chromosome, completeglycerol-3-phosphate acyltransferase5e-133475
NC_015388:1161740:1179836117983611825112676Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeGlycerol-3-phosphate O-acyltransferase3e-68260
NC_016906:3286384:3307151330715133093462196Gordonia polyisoprenivorans VH2 chromosome, complete genomeglycerol-3-phosphate acyltransferase PlsB8e-38159
NC_011896:1462258:1486049148604914883762328Mycobacterium leprae Br4923, complete genomeglycerol-3-phosphate acyltransferase8e-32139
NC_002677:1462233:1486025148602514883522328Mycobacterium leprae TN, complete genomeglycerol-3-phosphate acyltransferase8e-32139
NC_020126:7896447:7898342789834279009512610Myxococcus stipitatus DSM 14675, complete genomehypothetical protein1e-1585.5
NC_019904:334654:3346543346543363541701Echinicola vietnamensis DSM 17526 chromosome, complete genomeglycerol-3-phosphate O-acyltransferase1e-1172.4